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resistify
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public |
A resistance gene annotation tool
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2024-11-22 |
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quantms-utils
|
public |
Python package with scripts and helpers for the quantms workflow.
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2024-11-22 |
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biobb_mem
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public |
Biobb_mem is the Biobb module for membrane structure analysis.
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2024-11-22 |
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polap
|
public |
POLAP: plant organelle long-read assembly pipeline
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2024-11-22 |
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deeplc
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public |
DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
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2024-11-22 |
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panta
|
public |
PanTA - pan-genome pipeline
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2024-11-22 |
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htsinfer
|
public |
HTSinfer infers metadata from Illumina high throughput sequencing (HTS) data
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2024-11-22 |
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dnaapler
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public |
Reorients assembled microbial sequences
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2024-11-22 |
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deeplcretrainer
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public |
Evaluating DeepLC performance and retraining prediction models.
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2024-11-22 |
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simug
|
public |
A simple, flexible, and powerful tool to simulate genome sequences with pre-defined or random genomic variants.
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2024-11-22 |
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saccharis
|
public |
A CAZyme discovery tool. Easily create phylogenetic trees from FASTA files and CAZyme families.
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2024-11-22 |
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pangolin-data
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public |
Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments
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2024-11-22 |
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metabolights-utils
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public |
MetaboLights open metabolomics data repository command line interface (CLI), common MetaboLights data models, utility methods and classes.
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2024-11-22 |
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ega-cryptor
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public |
EGA Cryptor v2.0.0 is a tool designed to encrypt files compliant with the European Genome-phenome Archive (EGA)
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2024-11-22 |
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bioconda-repodata-patches
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public |
generate tweaks to index metadata, hosted separately from anaconda.org index
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2024-11-22 |
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savana
|
public |
SAVANA: a somatic structural variant caller for long-read data
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2024-11-21 |
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r-stitch
|
public |
STITCH - Sequencing To Imputation Through Constructing Haplotypes.
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2024-11-21 |
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icfree-ml
|
public |
Design of experiments (DoE) and machine learning packages for the iCFree project
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2024-11-21 |
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artic
|
public |
ARTIC pipeline - a bioinformatics pipeline for working with virus sequencing data sequenced with nanopore.
|
2024-11-21 |
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psm-utils
|
public |
Common utilities for parsing and handling peptide-spectrum matches and search engine results.
|
2024-11-21 |
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biobb_structure_utils
|
public |
Biobb_structure_utils is the Biobb module collection to modify or extract information from a PDB structure file.
|
2024-11-21 |
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biobb_pytorch
|
public |
biobb_pytorch is the Biobb module collection to create and train ML & DL models.
|
2024-11-21 |
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rmats
|
public |
MATS is a computational tool to detect differential alternative splicing events from RNA-Seq data.
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2024-11-21 |
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ntedit
|
public |
Ultrafast, lightweight, scalable genome assembly polishing, and SNV detection & annotation
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2024-11-21 |
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pdivas
|
public |
PDIVAS: Pathogenicity predictor of Deep-Intronic Variants causing Aberrant Splicing
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2024-11-21 |
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finemap
|
public |
Program for identifying causal SNPs and their effect sizes and heritability contributions
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2024-11-21 |
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pblat
|
public |
blat with multi-threads support
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2024-11-21 |
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wipertools
|
public |
A suite of programs that drop or fix pesky lines in FASTQ files and that split FASTQ files into chunks or merge them.
|
2024-11-21 |
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hmftools-amber
|
public |
Generates a tumor BAF file for use in PURPLE.
|
2024-11-21 |
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biobb_pmx
|
public |
Biobb_pmx is the Biobb module collection to perform PMX (http://pmx.mpibpc.mpg.de) executions.
|
2024-11-21 |
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core-snp-filter
|
public |
Filtering sites (i.e. columns) in a FASTA-format whole-genome pseudo-alignment.
|
2024-11-21 |
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polypolish
|
public |
Polishing genome assemblies with short reads.
|
2024-11-21 |
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pgrc
|
public |
A tool for compressing the DNA stream of FASTQ datasets.
|
2024-11-21 |
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liana
|
public |
LIANA+: a one-stop-shop framework for cell-cell communication
|
2024-11-21 |
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hmftools-isofox
|
public |
Isofox is a tool for counting fragment support for identifying and counting gene and transcript features using genome aligned RNASeq data in tumor samples.
|
2024-11-21 |
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hmftools-bam-tools
|
public |
Rapidly process BAMs for various tasks.
|
2024-11-21 |
|
hmftools-esvee
|
public |
Structural variant caller specialised for breakend-breakpoint calling.
|
2024-11-21 |
|
hmftools-chord
|
public |
Predict HRD using somatic mutations contexts
|
2024-11-21 |
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hmftools-lilac
|
public |
LILAC is a WGS tool to determine HLA Class I types.
|
2024-11-21 |
|
fwdpy11
|
public |
Forward-time population genetic simulation in Python.
|
2024-11-21 |
|
hmftools-cobalt
|
public |
Calculate read-depth counts and GC ratios to use in PURPLE.
|
2024-11-21 |
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hmftools-cuppa
|
public |
Predict tissue of origin for tumor samples from WGTS data.
|
2024-11-21 |
|
phabox
|
public |
Virus identification and analysis tool set
|
2024-11-21 |
|
iseq
|
public |
iSeq is a Bash script that allows you to download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
|
2024-11-21 |
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hmftools-pave
|
public |
PAVE annotates SNV/MNV/INDEL calls with consequence on corresponding genes, transcripts, and proteins.
|
2024-11-21 |
|
hmftools-peach
|
public |
Infer haplotypes for interpretation in a pharmacogenomic context
|
2024-11-21 |
|
hmftools-neo
|
public |
Identification of neoepitope and calculation of allele specific neoepitope binding and presentation likelihood.
|
2024-11-21 |
|
hmftools-orange
|
public |
ORANGE summarizes the key outputs from all algorithms in the Hartwig suite.
|
2024-11-21 |
|
hmftools-linx
|
public |
LINX is an annotation, interpretation and visualisation tool for structural variants.
|
2024-11-21 |
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aviary
|
public |
End-to-end metagenomics hybrid assembly and binning pipeline.
|
2024-11-21 |
