| Package Name | Access | Summary | Updated |
|---|---|---|---|
| aliview | public | AliView is an intuitive and fast alignment viewer and editor for DNA and amino acid sequences. | 2025-04-22 |
| metafun | public | Custom package for metafun workflow management | 2025-04-22 |
| postmaster | public | Postmaster is a tool for annotating transcriptome alignments with posterior alignment probabilities derived from salmon quantifications. | 2025-04-22 |
| danbing-tk | public | Toolkit for VNTR genotyping and repeat-pan genome graph construction | 2025-04-22 |
| r-psminer | public | Utilities for interacting with the pathogensurveillance pipeline. | 2025-04-22 |
| te-aid | public | Annotation helper tool for the manual curation of transposable element consensus sequences | 2025-04-22 |
| lassaseq | public | Tool for downloading Lassa virus sequences | 2025-04-22 |
| enviroampdesigner | public | Tool for training model and classifying reads from environmental ONT amplicon sequencing. | 2025-04-22 |
| snakemake-storage-plugin-sharepoint | public | Snakemake storage plugin for reading and writing files on Microsoft SharePoint. | 2025-04-22 |
| cayman | public | A command-line profiling tool for profiling CAZyme abundances in metagenomic datasets. | 2025-04-22 |
| pvga | public | PVGA is a powerful virus-focused assembler that does both assembly and polishing. | 2025-04-22 |
| gqlib | public | A gene quantification library. | 2025-04-22 |
| artex | public | Artex - Artic pipeline extension | 2025-04-22 |
| ctc-scite | public | CTC-SCITE is a software package to infer cell lineages of single-cells and clusters of single-cells. | 2025-04-22 |
| vpt | public | Command line tool for highly parallelized processing of Vizgen data | 2025-04-22 |
| neffy-cli | public | NEFF calculator and MSA file converter | 2025-04-22 |
| baczy | public | Bacterial toolkit | 2025-04-22 |
| gfviewer | public | A bioinformatics tool for visualizing the localization of multi-gene families across the genome of a given organism. | 2025-04-22 |
| rnalyze | public | A comprehensive pipeline for RNA-Seq data analysis. | 2025-04-22 |
| esme_esmf_openmpi_5_0_7 | public | ESMF - Earth System Modeling Framework | 2025-04-22 |
| esme_pnetcdf_openmpi_5_0_7 | public | PnetCDF - Parallel netCDF | 2025-04-22 |
| esme_netcdf-c_openmpi_5_0_7 | public | NetCDF-C - netCDF interface for C | 2025-04-22 |
| esme_omb_openmpi_5_0_7 | public | OSU Micro Benchmarks | 2025-04-22 |
| esme_netcdf-fortran_openmpi_5_0_7 | public | NetCDF-Fortran - netCDF interface for Fortran | 2025-04-22 |
| esme_openmpi_5_0_7 | public | Earth System Modelling Environment (ESME) - A bundle for scientific computing packages for climate modelling with MPI support. | 2025-04-22 |
