| Package Name | Access | Summary | Updated |
|---|---|---|---|
| tmscoring | public | Python implementation of the TMscore program. | 2025-04-22 |
| eider | public | Command line bioinformatics tools for DuckDB. | 2025-04-22 |
| amulety | public | Python package to create embeddings of BCR amino acid sequences. | 2025-04-22 |
| r-pio | public | Pretty I/O output to the console | 2025-04-22 |
| gci | public | A program for assessing genome contiguity. | 2025-04-22 |
| mypmfs_py | public | Python package for mypmfs training (includes batch download from PDB). | 2025-04-22 |
| hisat-3n | public | Graph-based alignment of next generation sequencing reads to a population of genomes. | 2025-04-22 |
| derip2 | public | Predict ancestral sequence of fungal repeat elements by correcting for RIP-like mutations in multi-sequence DNA alignments. | 2025-04-22 |
| perl-postscript-simple | public | Produce PostScript files from Perl. | 2025-04-22 |
| pysctransform | public | Python package to perform normalization and variance-stabilization of single-cell data. | 2025-04-22 |
| metaspace2020 | public | Python library for connecting to the METASPACE platform. | 2025-04-22 |
| ogtfinder | public | OGTFinder is an optimal growth temperature prediction tool for prokaryotes using proteome-derived features. | 2025-04-22 |
| ddqc | public | Biology-centered data-driven quality control for scRNA-seq. | 2025-04-22 |
| yleaf-pipelines | public | Yleaf-pipelines - A pipeline-optimized version of Yleaf, a tool for Y-chromosome haplogroup prediction. | 2025-04-22 |
| ngsfetch | public | Fast retrieval of metadata and fastq files with ffq and aria2c | 2025-04-22 |
| vambcore | public | Performant backend functions for the Vamb binning tool | 2025-04-22 |
| scanpy-cli | public | CLI for Scanpy | 2025-04-22 |
| yleaf | public | Yleaf - A tool for Y-chromosome haplogroup prediction | 2025-04-22 |
| psauron | public | PSAURON: a machine learning model for rapid assessment of protein coding gene annotation | 2025-04-22 |
| fastcov | public | This package installs fastcov and all it's dependencies. fastcov is used to plot coverage plots based on BAM files. | 2025-04-22 |
| alientrimmer | public | Tool for trimming non-confident bases and alien oligo-nucleotide sequences from sequencing reads. | 2025-04-22 |
| spacedust | public | De novo discovery of conserved gene clusters in microbial genomes with Spacedust | 2025-04-22 |
| vcf_parser | public | Small library for parsing vcf files. | 2025-04-22 |
| snakemake-executor-plugin-aws-batch | public | A Snakemake executor plugin for submitting jobs to AWS Batch. | 2025-04-22 |
| cctyper | public | CRISPRCasTyper: Automatic detection and subtyping of CRISPR-Cas operons | 2025-04-22 |
