| Package Name | Access | Summary | Updated |
|---|---|---|---|
| kmergenie | public | KmerGenie estimates the best k-mer length for genome de novo assembly | 2025-07-28 |
| ribotin | public | Ribosomal DNA assembly tool. | 2025-07-28 |
| maker | public | MAKER is a portable and easily configurable genome annotation pipeline. | 2025-07-28 |
| mp-est | public | Maximum Pseudo-likelihood Estimation of Species Trees | 2025-07-28 |
| winnowmap | public | Winnowmap is a long-read mapping algorithm optimized for mapping ONT and PacBio reads to repetitive reference sequences. | 2025-07-28 |
| graphaligner | public | Sequence to graph aligner for long reads | 2025-07-27 |
| plass | public | Plass (Protein-Level ASSembler) and PenguiN (Protein-guided Nucleotide assembler) are methods to assemble short read sequencing data on a protein level to proteins or DNA contigs | 2025-07-27 |
| spacepharer | public | SpacePHARER: Sensitive identification of phages from CRISPR spacers in prokaryotic hosts | 2025-07-27 |
| alphafill | public | Transplant missing compounds to the AlphaFold models | 2025-07-27 |
| mrtrix3 | public | A set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density | 2025-07-27 |
| fibertools-rs | public | Mitchell Vollger's rust tools for fiberseq data. | 2025-07-27 |
| hmftools-orange | public | ORANGE summarizes the key outputs from all algorithms in the Hartwig suite. | 2025-07-27 |
| mmseqs2 | public | MMseqs2: ultra fast and sensitive sequence search and clustering suite | 2025-07-27 |
| checkatlas | public | One liner tool to check the quality of your single-cell atlases. | 2025-07-26 |
| viloca | public | VILOCA is a tool to analyse short- and long-read sequencing viral samples. It provides mutation calls and local haplotypes. | 2025-07-25 |
| bandwagon | public | Simulate DNA band patterns for gel migration experiments | 2025-07-24 |
| met4j | public | Met4J is an open-source Java library dedicated to the structural analysis of metabolic networks | 2025-07-24 |
| metadmg | public | metaDMG-cpp: fast and efficient method for estimating mutation and damage rates in ancient DNA data. | 2025-07-24 |
| echidna | public | Mapping genotype to phenotype through joint probabilistic modeling of single-cell gene expression and chromosomal copy number variation. | 2025-07-24 |
| hmftools-esvee | public | Structural variant caller specialised for breakend-breakpoint calling. | 2025-07-24 |
| ska2 | public | SKA (Split Kmer Analysis) version 2. | 2025-07-24 |
| perl-dbd-sqlite | public | Self Contained RDBMS in a DBI Driver | 2025-07-24 |
| gencore | public | Generate consensus reads to reduce sequencing noises and remove duplications | 2025-07-24 |
| genform | public | Generation of molecular formulas by high-resolution MS and MS/MS data | 2025-07-24 |
| mutscan | public | Detect and visualize target mutations by scanning FastQ files directly. | 2025-07-24 |
