| Package Name | Access | Summary | Updated |
|---|---|---|---|
| rust-proseg | public | A Rust crate for running Proseg, a cell segmentation method for in situ spatial transcriptomics. | 2025-07-29 |
| odgi | public | An optimized dynamic genome/graph implementation. | 2025-07-29 |
| reduce | public | Reduce - tool for adding and correcting hydrogens in PDB files. | 2025-07-29 |
| corneto | public | CORNETO: A Unified Framework for Omics-Driven Network Inference. | 2025-07-29 |
| trgt | public | Tandem repeat genotyping and visualization from PacBio HiFi data | 2025-07-29 |
| flashlfq | public | Ultrafast label-free quantification algorithm for mass-spectrometry proteomics. | 2025-07-29 |
| privateer | public | The Swiss Army knife for carbohydrate structure validation, refinement and analysis | 2025-07-29 |
| protal | public | Reference-based metagenomic analysis. | 2025-07-29 |
| evofr | public | Tools for evolutionary forecasting. | 2025-07-29 |
| rdock | public | No Summary | 2025-07-29 |
| snakemake-interface-report-plugins | public | This package provides a stable interface for interactions between Snakemake and its report plugins. | 2025-07-29 |
| snakemake-interface-executor-plugins | public | This package provides a stable interface for interactions between Snakemake and its executor plugins. | 2025-07-29 |
| wfmash | public | A pangenome-scale aligner. | 2025-07-29 |
| viroconstrictor | public | ViroConstrictor is a flexible pipeline for analysis of targeted viral sequencing data | 2025-07-29 |
| nanoblaster | public | Basic Local Alignment and Search Tool for Oxford Nanopore Long Sequences | 2025-07-28 |
| bte | public | Cython wrapper enabling use of the MAT library in Python. | 2025-07-28 |
| sequana | public | A set of standalone application and snakemake pipelines dedicated to NGS (new generation sequencing) analysis. | 2025-07-28 |
| superintervals | public | Rapid interval intersections. | 2025-07-28 |
| ensembl-py | public | Ensembl Python base library | 2025-07-28 |
| mupbwt | public | A light pbwt-based index | 2025-07-28 |
| diamond | public | Accelerated BLAST compatible local sequence aligner. | 2025-07-28 |
| hmftools-cobalt | public | Calculate read-depth counts and GC ratios to use in PURPLE. | 2025-07-28 |
| hmftools-isofox | public | Isofox is a tool for counting fragment support for identifying and counting gene and transcript features using genome aligned RNASeq data in tumor samples. | 2025-07-28 |
| readfq | public | A high-speed tool to calculate reads number and total base count in FASTQ file, forked from Li Heng's original version | 2025-07-28 |
| kmergenie | public | KmerGenie estimates the best k-mer length for genome de novo assembly | 2025-07-28 |
