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r-presto
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public |
Scalable implementation of the Wilcoxon rank sum test and auROC statistic. Interfaces to dense and sparse matrices, as well as genomics analysis frameworks Seurat and SingleCellExperiment.
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2025-08-28 |
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coot-headless
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public |
Coot Headless API - Software for macromolecular model building.
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2025-08-28 |
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allelecodes
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public |
Allele Code Assignment Algorithm for cgMLST schemes
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2025-08-27 |
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pysradb
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public |
Python package for retrieving metadata and downloading datasets from SRA/ENA/GEO
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2025-08-27 |
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jcvi
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public |
Python utility libraries on genome assembly, annotation, and comparative genomics.
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2025-08-27 |
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seismic-rna
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public |
SEISMIC-RNA software by the Rouskin Lab.
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2025-08-26 |
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probe
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public |
Evaluate and visualize protein interatomic packing
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2025-08-26 |
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pyani-plus
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public |
Whole-genome classification of microbes using Average Nucleotide Identity and similar methods.
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2025-08-26 |
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cats-rb
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public |
Reference-based transcriptome assembly quality assessment tool.
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2025-08-25 |
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alignoth
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public |
A tool for creating alignment plots from bam files.
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2025-08-25 |
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perl-minion
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public |
Job queue
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2025-08-25 |
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kmercamel
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public |
KmerCamel🐫 - compressing k-mer sets using masked superstrings.
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2025-08-25 |
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pgscatalog-utils
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public |
Utilities for working with PGS Catalog API and scoring files.
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2025-08-25 |
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openms
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public |
OpenMS is an open-source software C++ library for LC-MS data management and analyses.
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2025-08-24 |
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libopenms
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public |
OpenMS is an open-source software C++ library for LC-MS data management and analyses.
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2025-08-24 |
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openms-thirdparty
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public |
OpenMS is an open-source software C++ library for LC-MS data management and analyses.
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2025-08-24 |
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r-azimuth
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public |
Azimuth is a Shiny app demonstrating a query-reference mapping algorithm for single-cell data.
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2025-08-22 |
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r-seurat-data
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public |
Single cell RNA sequencing datasets can be large, consisting of matrices that contain expression data for several thousand features across several thousand cells. This package is designed to easily install, manage, and learn about various single-cell datasets, provided Seurat objects and distributed as independent packages.
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2025-08-22 |
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eviann
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public |
Evidence-based eukaryotic genome annotation software.
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2025-08-22 |
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r-seurat-disk
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public |
The h5Seurat file format is specifically designed for the storage and analysis of multi-modal single-cell and spatially-resolved expression experiments, for example, from CITE-seq or 10X Visium technologies. It holds all molecular information and associated metadata, including (for example) nearest-neighbor graphs, dimensional reduction information, spatial coordinates and image data, and cluster labels. We also support rapid and on-disk conversion between h5Seurat and AnnData objects, with the goal of enhancing interoperability between Seurat and Scanpy.
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2025-08-22 |
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bioconductor-tfbstools
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public |
Software Package for Transcription Factor Binding Site (TFBS) Analysis.
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2025-08-22 |
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svclone
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public |
Computational method for inferring cancer cell fraction of tumour SVs from WGS.
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2025-08-22 |
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bioconductor-cner
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public |
CNE Detection and Visualization.
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2025-08-22 |
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cactus-gfa-tools
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public |
Command-line utilitites required for the Cactus Pangenome Pipeline.
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2025-08-22 |
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alfred
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public |
BAM alignment statistics, feature counting and feature annotation
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2025-08-22 |
