| Package Name | Access | Summary | Updated |
|---|---|---|---|
| olivar | public | Olivar PCR tiling design | 2025-08-28 |
| freyja | public | Freyja recovers relative lineage abundances from mixed SARS-CoV-2 samples and provides functionality to analyze lineage dynamics. | 2025-08-28 |
| arborator | public | Arborator: Simplifying operationalized pathogen surveillance and outbreak detection. | 2025-08-28 |
| pgscatalog.calc | public | Libraries and applications for working with calculated polygenic scores. | 2025-08-28 |
| gubbins | public | Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins. | 2025-08-28 |
| magmax | public | MAGmax is a robust tool for dereplicating MAGs through bin merging and reassembly. | 2025-08-28 |
| r-flanders | public | Fast colocalization using AnnData objects in R | 2025-08-28 |
| r-presto | public | Scalable implementation of the Wilcoxon rank sum test and auROC statistic. Interfaces to dense and sparse matrices, as well as genomics analysis frameworks Seurat and SingleCellExperiment. | 2025-08-28 |
| coot-headless | public | Coot Headless API - Software for macromolecular model building. | 2025-08-28 |
| allelecodes | public | Allele Code Assignment Algorithm for cgMLST schemes | 2025-08-27 |
| pysradb | public | Python package for retrieving metadata and downloading datasets from SRA/ENA/GEO | 2025-08-27 |
| jcvi | public | Python utility libraries on genome assembly, annotation, and comparative genomics. | 2025-08-27 |
| seismic-rna | public | SEISMIC-RNA software by the Rouskin Lab. | 2025-08-26 |
| probe | public | Evaluate and visualize protein interatomic packing | 2025-08-26 |
| pyani-plus | public | Whole-genome classification of microbes using Average Nucleotide Identity and similar methods. | 2025-08-26 |
| cats-rb | public | Reference-based transcriptome assembly quality assessment tool. | 2025-08-25 |
| alignoth | public | A tool for creating alignment plots from bam files. | 2025-08-25 |
| perl-minion | public | Job queue | 2025-08-25 |
| kmercamel | public | KmerCamel🐫 - compressing k-mer sets using masked superstrings. | 2025-08-25 |
| pgscatalog-utils | public | Utilities for working with PGS Catalog API and scoring files. | 2025-08-25 |
| openms | public | OpenMS is an open-source software C++ library for LC-MS data management and analyses. | 2025-08-24 |
| libopenms | public | OpenMS is an open-source software C++ library for LC-MS data management and analyses. | 2025-08-24 |
| openms-thirdparty | public | OpenMS is an open-source software C++ library for LC-MS data management and analyses. | 2025-08-24 |
| r-azimuth | public | Azimuth is a Shiny app demonstrating a query-reference mapping algorithm for single-cell data. | 2025-08-22 |
| r-seurat-data | public | Single cell RNA sequencing datasets can be large, consisting of matrices that contain expression data for several thousand features across several thousand cells. This package is designed to easily install, manage, and learn about various single-cell datasets, provided Seurat objects and distributed as independent packages. | 2025-08-22 |
