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bioconductor-precisiontrialdrawer
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public |
A Tool to Analyze and Design NGS Based Custom Gene Panels
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2023-06-16 |
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pepquery
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public |
PepQuery is a peptide-centric search engine for novel peptide identification and validation.
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2023-06-16 |
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spliceai-wrapper
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public |
A caching wrapper for Illumina SpliceAI.
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2023-06-16 |
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pylca
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public |
Lowest common ancestor (LCA) algorithm implementation in python
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2023-06-16 |
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bioconductor-gapgom
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public |
GAPGOM (novel Gene Annotation Prediction and other GO Metrics)
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2023-06-16 |
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karyopype
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public |
Chromosomal visualization in Python.
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2023-06-16 |
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bioconductor-deco
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public |
Decomposing Heterogeneous Cohorts using Omic Data Profiling
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2023-06-16 |
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bioconductor-probatch
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public |
Tools for Diagnostics and Corrections of Batch Effects in Proteomics
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2023-06-16 |
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mace
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public |
Model Based Analysis for ChIP-exo data
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2023-06-16 |
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spliceai
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public |
A deep learning-based tool to identify splice variants.
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2023-06-16 |
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crypto_typer
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public |
This package crypto_typer: tool to subtype the parasite, Cryptosporidium, based on the 18S and gp60 markers.
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2023-06-16 |
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cmsip
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public |
A package for detecting differential 5hmC regions from CMS-IP sequencing data.
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2023-06-16 |
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graph2pro-var
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public |
meta-proteogenomic identification from mass spec and metagenomic/transcriptomic data
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2023-06-16 |
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bioconductor-omicslonda
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public |
Omics Longitudinal Differential Analysis
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2023-06-16 |
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moabs
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public |
Methylation analysis on Bisulfite-Sequencing reads
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2023-06-16 |
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bioconductor-cytofast
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public |
cytofast - A quick visualization and analysis tool for CyTOF data
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2023-06-16 |
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chiron
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public |
A deep neural network basecaller for nanopore sequencing.
|
2023-06-16 |
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bioconductor-hcabrowser
|
public |
Browse the Human Cell Atlas data portal
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2023-06-16 |
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bioconductor-coregflux
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public |
CoRegFlux
|
2023-06-16 |
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bioconductor-scalign
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public |
An alignment and integration method for single cell genomics
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2023-06-16 |
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bioconductor-netboost
|
public |
Network Analysis Supported by Boosting
|
2023-06-16 |
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bioconductor-mofa
|
public |
Multi-Omics Factor Analysis (MOFA)
|
2023-06-16 |
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ezclermont
|
public |
easily determine the Clermont 2013 E coli phylotype
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2023-06-16 |
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bioconductor-potra
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public |
PoTRA: Pathways of Topological Rank Analysis
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2023-06-16 |
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plasmidfinder
|
public |
PlasmidFinder allows identification of plasmids in total or partial sequenced isolates of bacteria.
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2023-06-16 |
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sesimcmc
|
public |
Motif finding with modified MCMC
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2023-06-16 |
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mapgl
|
public |
Prediction of lineage-specific gain and loss of sequence elements using phylogenetic maximum parsimony.
|
2023-06-16 |
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dinosaur
|
public |
Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.
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2023-06-16 |
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python-bioformats
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public |
Read and write life sciences file formats
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2023-06-16 |
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perl-pdf-table
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public |
A utility class for building table layouts in a PDF::API2 object.
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2023-06-16 |
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fargene
|
public |
Fragmented Antibiotic Resistance Gene iENntifiEr takes either fragmented metagenomic data or longer sequences as input and predicts and delivers full-length antiobiotic resistance genes as output
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2023-06-16 |
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sccaf
|
public |
Single-Cell Clustering Assessment Framework
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2023-06-16 |
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ultraheatmap
|
public |
ultraheatmaps facilitates the production of deepTools heatmaps
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2023-06-16 |
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hca
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public |
Human Cell Atlas Data Storage System Command Line Interface. This repository is a Command Line Interface (CLI) and Python library (API) for interacting with the Data Coordination Platform (DCP) of the Human Cell Atlas (HCA). Currently the hca package supports interaction with the Upload Service and Data Storage Service (DSS) for services such as uploading, downloading, and querying data.
|
2023-06-16 |
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dcplib
|
public |
Modules shared among multiple Data Coordination Platform components.
|
2023-06-16 |
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figtree
|
public |
FigTree is designed as a graphical viewer of phylogenetic trees and as a program for producing publication-ready figures.
|
2023-06-16 |
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dbgraph
|
public |
A graph-centric approach for metagenome-guided peptide identification in metaproteomics.
|
2023-06-16 |
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seq-to-first-iso
|
public |
Compute first two isotopologues intensity from peptide sequence
|
2023-06-16 |
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magicblast
|
public |
NCBI BLAST next generation read mapper
|
2023-06-16 |
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deepstats
|
public |
A statistical and dataviz toolbox for deeptools, genomic signals, and more.
|
2023-06-16 |
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mobidic-mpa
|
public |
MPA: MoBiDiC Prioritization Algorithm
|
2023-06-16 |
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hca-matrix-downloader
|
public |
Python client for the HCA DCP matrix service
|
2023-06-16 |
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guessmylt
|
public |
Software to guess the RNA-Seq library type.
|
2023-06-16 |
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hmmratac
|
public |
Peak caller for ATAC-seq data
|
2023-06-16 |
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ripser
|
public |
Ripser: efficient computation of Vietoris–Rips persistence barcodes.
|
2023-06-16 |
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music-deconvolution
|
public |
Multi-subject single cell deconvolution
|
2023-06-16 |
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chunked-scatter
|
public |
Chunk and scatter the regions in a bed or sequence dict file
|
2023-06-16 |
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wisestork
|
public |
Within-sample CNV calling
|
2023-06-16 |
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biobasehttptools
|
public |
Tools for querying bioinformatics web resources
|
2023-06-16 |
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centreseq
|
public |
Fast generation of core genome from bacterial strains
|
2023-06-16 |
