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bamkit
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public |
Tools for common BAM file manipulations
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2023-06-16 |
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nanomod
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public |
A computational method for Nanopore signal analysis and modification detection.
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2023-06-16 |
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deepmod
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public |
A deep-learning method for DNA modifcation (5mC and 6mA) prediction.
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2023-06-16 |
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gmgc-mapper
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public |
Map genes and genome to the Global Microbial Gene Catalog (GMGC)
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2023-06-16 |
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atlas-data-import
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public |
Scripts for extracting expression- and metadata from Single Cell Expression Atlas in a programmatic way.
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2023-06-16 |
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sequnwinder
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public |
SeqUnwinder is a framework for characterizing class-discriminative motifs in a collection of genomic loci that have several (overlapping) annotation labels.
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2023-06-16 |
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galaxy-workflow-executor
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public |
Execute workflows on Galaxy through the CLI
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2023-06-16 |
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chexalign
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public |
ChExAlign is used for alignment and quantification of ChIP-exo crosslinking patterns.
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2023-06-16 |
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cdk-inchi-to-svg
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public |
Convert an InChI string to a SVG file
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2023-06-16 |
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variantbreak
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public |
Structural variant analyzer for data visualization on VariantMap
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2023-06-16 |
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ctseq
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public |
ctSeq is a pipeline to analyze methylation patch PCR data
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2023-06-16 |
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homoeditdistance
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public |
An implementation of the homo-edit distance algorithm.
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2023-06-16 |
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treerecs
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public |
correct, rearrange and (re-)root gene trees with regard to a given species tree
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2023-06-16 |
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contigtax
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public |
Assign taxonomy to metagenomic contigs (previously know as tango)
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2023-06-16 |
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marvel
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public |
MARVEL: Metagenomic Analyses and Retrieval of Viral Elements
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2023-06-16 |
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hypro
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public |
Extend hypothetical prokka protein annotations using additional homology searches against larger databases
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2023-06-16 |
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im-pipelines
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public |
Components for cheminformatics and computational chemistry from InformaticsMatters.
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2023-06-16 |
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galru
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public |
Rapid spoligotyping for Mycobacterium tuberculosis directly from long read sequencing
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2023-06-16 |
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stringmeup
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public |
A post-processing tool to reclassify Kraken 2 output based on the confidence score and/or minimum minimizer hit groups.
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2023-06-16 |
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adpred
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public |
python adpred module for prediction of Transcription activation domains from protein sequences
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2023-06-16 |
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gepard
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public |
Genome Pair Rapid Dotter (gepard).
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2023-06-16 |
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scagaire
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public |
Scagaire allows you to take in gene predictions from a metagenomic sample and filter them by bacterial/pathogenic species
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2023-06-16 |
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neatms
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public |
NeatMS is an open source python package for untargeted LCMS deep learning peak curation
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2023-06-16 |
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bioconductor-mafdb.gnomad.r3.0.grch38
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public |
Minor allele frequency data from gnomAD release 3.0 for GRCh38
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2023-06-16 |
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bioconductor-mafh5.gnomad.r3.0.grch38
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public |
Minor allele frequency data from gnomAD release 3.0 for GRCh38 stored using a HDF5 backend
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2023-06-16 |
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pyrpipe
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public |
pyrpipe is a lightweight python package for RNA-Seq workflows.
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2023-06-16 |
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sampei
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public |
SAMPEI, a searching method leveraging high quality query spectra within the same or different dataset to assign target spectra with peptide sequence and undefined modification (mass shift)
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2023-06-16 |
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pafpy
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public |
A lightweight library for working with PAF (Pairwise mApping Format) files
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2023-06-16 |
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emptydrops
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public |
Python implementation of emptydrops from 10X Cellranger v3.0.2
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2023-06-16 |
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r-gmwt
|
public |
Generalized Mann-Whitney type tests based on probabilistic indices and new diagnostic plots.
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2023-06-16 |
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r-clinfun
|
public |
Utilities to make your clinical collaborations easier if not fun. It contains functions for designing studies such as Simon 2-stage and group sequential designs and for data analysis such as Jonckheere-Terpstra test and estimating survival quantiles.
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2023-06-16 |
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perl-gfacs
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public |
gFACs is a filtering, analysis, and conversion tool to unify genome annotations across alignment and gene prediction frameworks.
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2023-06-16 |
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bioconductor-netboxr
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public |
netboxr
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2023-06-16 |
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datma
|
public |
DistributedAuTomaticMetagenomicAssembly andAnnotation framework
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2023-06-16 |
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bioconductor-gcsconnection
|
public |
Creating R Connection with Google Cloud Storage
|
2023-06-16 |
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bioconductor-ctggem
|
public |
Generating Tree Hierarchy Visualizations from Gene Expression Data
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2023-06-16 |
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perl-if
|
public |
use a Perl module if a condition holds
|
2023-06-16 |
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virchip
|
public |
Virtual ChIP-seq predicts transcription factor binding in any cell type with chromatin accessibility and transcriptome data. Manuscript DOI: https://doi.org/10.1101/168419
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2023-06-16 |
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bioconductor-pubscore
|
public |
Automatic calculation of literature relevance of genes
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2023-06-16 |
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bioconductor-scmageck
|
public |
Identify genes associated with multiple expression phenotypes in single-cell CRISPR screening data
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2023-06-16 |
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bioconductor-netdx.examples
|
public |
Companion data package to netDx
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2023-06-16 |
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simplesam
|
public |
Simple pure Python SAM parser and objects for working with SAM records
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2023-06-16 |
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comparem
|
public |
A toolbox for comparative genomics.
|
2023-06-16 |
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docking_py
|
public |
Docking_py is a python library allowing a simplified use of the Smina, vina, qvina2 and qvinaw docking software. Docking_py can be easily automatize and scripted.
|
2023-06-16 |
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bio-ting
|
public |
ting is a tool clustering large scale T cell receptor repertoires by antigen-specificity
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2023-06-16 |
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cansnper2
|
public |
A toolkit for SNP-typing bacterial genomes.
|
2023-06-16 |
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genometreetk
|
public |
A toolbox for working with genome trees.
|
2023-06-16 |
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start-asap
|
public |
Prepare project directory and project sheet for ASA3P
|
2023-06-16 |
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sarscov2summary
|
public |
Formatter for Galaxy SARS-CoV2 Selection Analysis Workflow
|
2023-06-16 |
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sarscov2formatter
|
public |
Formatter for Galaxy SARS-CoV2 Selection Analysis Workflow
|
2023-06-16 |
