| Package Name | Access | Summary | Updated |
|---|---|---|---|
| h5sparse | public | Scipy sparse matrix in HDF5. | 2025-04-22 |
| tb-ml | public | A simple tool for creating machine learning antimicrobial resistance prediction pipelines using Docker containers for M. tuberculosis. | 2025-04-22 |
| sashimi-py | public | This is an pure Python version of sashimi plot | 2025-04-22 |
| sanntis | public | SMBGC Annotation using Neural Networks Trained on Interpro Signatures. | 2025-04-22 |
| svhip | public | Retrainable machine learning pipeline for the detection of secondary structure conservation on a genome-level. | 2025-04-22 |
| physiofit_data_manager | public | Handle data input management for physiofit4galaxy | 2025-04-22 |
| pyrovelocity | public | Probabilistic RNA velocity for cell fate uncertainty estimation | 2025-04-22 |
| strandphaser | public | Phase Strand-seq data | 2025-04-22 |
| args_oap | public | ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Database | 2025-04-22 |
| trand | public | transcript event and distance | 2025-04-22 |
| psm-utils | public | Common utilities for parsing and handling peptide-spectrum matches and search engine results. | 2025-04-22 |
| rnahybrid | public | RNAhybrid is a tool for finding the minimum free energy hybridization of a long and a short RNA. | 2025-04-22 |
| r-crisprcleanr | public | Analysis of CRISPR functional genomics, remove false positive due to CNVs. | 2025-04-22 |
| r-enchantr | public | Analysis of immune repertoires. QC and reports for the analysis of AIRR-seq data with Immcantation | 2025-04-22 |
| scitrack | public | SciTrack provides basic logging capabilities to track scientific computations. | 2025-04-22 |
| ampcombi | public | A parsing tool to convert and summarise the outputs from multiple AMP detection tools. | 2025-04-22 |
| segmetrics | public | A Python package implementing image segmentation and object detection performance measures, for biomedical image analysis and beyond. | 2025-04-22 |
| r-calder2 | public | CALDER is a Hi-C analysis tool for the analysis of hierarchical chromatin interactions | 2025-04-22 |
| pavfinder | public | PAVFinder is a Python package that detects structural variants from de novo assemblies. | 2025-04-22 |
| flexserv | public | FlexServ protein structure conformational ensemble generation tools | 2025-04-22 |
| pybmtools | public | A python extension written in C for quick access to DNA methylation BM files. | 2025-04-22 |
| phamb | public | phamb discovery approach used to isolate metagenome derived viromes and High-quality viral genomes | 2025-04-22 |
| vase | public | Variant Annotation, Segregation and Exclusion for family or cohort based rare-disease sequencing studies | 2025-04-22 |
| parse-vcf | public | Variant Call Format parser and convenience methods | 2025-04-22 |
| etoki | public | EToKi (Enterobase Tool Kit) includes methods related to Enterobase data analysis pipelines | 2025-04-22 |
