|
marker-magu
|
public |
Marker-MAGu: Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes
|
2023-09-17 |
|
constax
|
public |
A software for accurate taxonomic classification of environmental DNA markers
|
2023-09-17 |
|
aminoextract
|
public |
AminoExtract is an application to extract aminoacid sequences from a fasta file based on a GFF.
|
2023-09-12 |
|
pbiotools
|
public |
Miscellaneous bioinformatics and other supporting utilities for Python 3
|
2023-09-12 |
|
rsrq
|
public |
A minimal Redis-backed queue system.
|
2023-09-12 |
|
mokapot
|
public |
Fast and flexible semi-supervised learning for peptide detection
|
2023-09-12 |
|
isatools
|
public |
Metadata tracking tools help to manage an increasingly diverse set of life science, environmental and biomedical experiments
|
2023-09-12 |
|
aligncov
|
public |
Obtain tidy alignment coverage info from sorted BAM files
|
2023-09-11 |
|
gentle
|
public |
Software suite for DNA cloning
|
2023-09-11 |
|
mgcod
|
public |
Recognition of genetic codes (incl. multiple genetic codes in phage genomes) and genetic-code-informed annotation of coding regions in prokaryotic sequences
|
2023-09-11 |
|
r-mytai
|
public |
Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2017) <doi:10.1093/bioinformatics/btx835>). The aim of this tool is to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest (Drost et al. (2016) <doi:10.1101/051565>).
|
2023-09-10 |
|
microbecensus
|
public |
A command-line tool for estimating average genome size from shotgun sequence data
|
2023-09-10 |
|
trinotate
|
public |
Trinotate is a comprehensive annotation suite designed for automatic functional annotation of transcriptomes, particularly de novo assembled transcriptomes, from model or non-model organisms
|
2023-09-09 |
|
varscan
|
public |
variant detection in massively parallel sequencing data
|
2023-09-09 |
|
emblmygff3
|
public |
An efficient way to convert gff3 annotation files into EMBL format ready to submit.
|
2023-09-08 |
|
finestructure
|
public |
fineSTRUCTURE is a fast and powerful algorithm for identifying population structure using dense sequencing data.
|
2023-09-08 |
|
cmsearch_tblout_deoverlap
|
public |
cmsearch-deoverlap.pl: remove lower scoring overlaps from cmsearch
|
2023-09-07 |
|
sam-algorithm
|
public |
The Self-Assembling-Manifold algorithm
|
2023-09-07 |
|
isoncorrect
|
public |
De novo error-correction of long-read transcriptome reads.
|
2023-09-06 |
|
taxtastic
|
public |
Tools for taxonomic naming and annotation
|
2023-09-06 |
|
rich-msa
|
public |
A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
|
2023-09-06 |
|
cytosnake
|
public |
Orchestrating high-dimensional cell morphology data processing pipelines
|
2023-09-06 |
|
gromacs_py
|
public |
Gromacs_py is a python library allowing a simplified use of the gromacs MD simulation software.
|
2023-09-06 |
|
dr-disco
|
public |
Dr. Disco: fusion gene and genomic breakpoint detection in random hexamer RNA-seq data
|
2023-09-06 |
|
python-nextflow
|
public |
Python module to run Nextflow pipelines
|
2023-09-06 |
|
scorpio
|
public |
Serious constellations of reoccurring phylogenetically-independent origin
|
2023-09-05 |
|
pywfa
|
public |
A python wrapper for wavefront alignment using WFA2-lib
|
2023-09-05 |
|
asqcan
|
public |
A combined pipeline for bacterial genome assembly, quality control and annotation
|
2023-09-05 |
|
modlamp
|
public |
python package for in silico peptide design and QSAR studies
|
2023-09-04 |
|
digestiflow-demux
|
public |
Digestiflow Command Line Client.
|
2023-09-04 |
|
refgenieserver
|
public |
This server provides both a web interface and a RESTful API. Users may explore and download archived indexes from the web interface or develop tools that programmatically query the API.
|
2023-09-04 |
|
multivelo
|
public |
Multi-omic extension of single-cell RNA velocity
|
2023-09-03 |
|
mhcgnomes
|
public |
Python library for parsing MHC nomenclature in the wild
|
2023-09-03 |
|
sfs
|
public |
CLI tool for site frequency spectra.
|
2023-09-01 |
|
quantiprot
|
public |
Quantiprot is a Python package for quantitative analysis of protein sequences
|
2023-09-01 |
|
decoupler
|
public |
Ensemble of methods to infer biological activities from omics data
|
2023-08-31 |
|
noah-cli
|
public |
a project management tool for reproducible, portable, and streamlined bioinformatics analysis
|
2023-08-30 |
|
metasnek
|
public |
Misc functions for metagenomics pipelines
|
2023-08-30 |
|
efishent
|
public |
A tool to design RNA FISH oligos/probes
|
2023-08-29 |
|
pileuppy
|
public |
Colorful and fast tool designed to draw alignment pileup.
|
2023-08-29 |
|
massiveqc
|
public |
Tools for QC massive RNA-seq samples
|
2023-08-29 |
|
bioinfokit
|
public |
The bioinfokit toolkit aimed to provide various easy-to-use functionalities to analyze, visualize, and interpret the biological data generated from genome-scale omics experiments.
|
2023-08-28 |
|
geno2phenotb
|
public |
Prediction of Mycobacterium tuberculosis drug resistance from WGS data
|
2023-08-26 |
|
happy-python
|
public |
Haploidy and Size Completeness Estimation with Python
|
2023-08-26 |
|
dnamarkmaker
|
public |
DNAMarkMaker: pipeline to development ARMS and CAPS marker
|
2023-08-26 |
|
mtbseq
|
public |
Pipeline for WGS analysis of M. tuberculosis
|
2023-08-24 |
|
binny
|
public |
An automated binning algorithm to recover high-quality genomes from complex metagenomic datasets. Note: This is a development version.
|
2023-08-22 |
|
kmd_hmdb_api_client
|
public |
The KMD HMDB project API Client
|
2023-08-22 |
|
ipapy2
|
public |
Integrated Probabilistic Annotation (IPA) 2.0 - Python implementation
|
2023-08-21 |
|
mapdamage2
|
public |
mapDamage: tracking and quantifying damage patterns in ancient DNA sequences http://geogenetics.ku.dk/all_literature/mapdamage/
|
2023-08-17 |
