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cnvkit
|
public |
Copy number variant detection from high-throughput sequencing.
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2024-11-18 |
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kestrel
|
public |
Mapping-free variant caller for short-read Illumina data
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2024-11-16 |
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jaeger-bio
|
public |
A quick and precise pipeline for detecting phages in sequence assemblies.
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2024-11-15 |
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zamp
|
public |
zAMP: bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics
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2024-11-15 |
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merqury
|
public |
Evaluate genome assemblies with k-mers and more.
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2024-11-15 |
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krakentools
|
public |
KrakenTools is a suite of scripts to be used for post-analysis of Kraken/KrakenUniq/Kraken2/Bracken results. Please cite the relevant paper if using KrakenTools with any of the listed programs.
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2024-11-15 |
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breakfast
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public |
breakfast: fast putative outbreak cluster and infection chain detection using SNPs.
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2024-11-15 |
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virheat
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public |
Visualize microbial evolution at the SNP level by creating a heatmap from vcf files.
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2024-11-15 |
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biobb_chemistry
|
public |
Biobb_chemistry is the Biobb module collection to perform chemical conversions.
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2024-11-15 |
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biobb_dna
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public |
Biobb_dna is a package composed of different analyses for nucleic acid trajectories.
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2024-11-15 |
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beagle
|
public |
Beagle is a software package for phasing genotypes and for imputing ungenotyped markers.
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2024-11-14 |
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get_homologues
|
public |
A versatile software package for pan-genome analysis, including GET_HOMOLOGUES and GET_HOMOLOGUES-EST
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2024-11-14 |
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snipit
|
public |
Visualize snps relative to a reference sequence
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2024-11-13 |
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teloclip
|
public |
A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
|
2024-11-13 |
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biobb_analysis
|
public |
Biobb_analysis is the Biobb module collection to perform analysis of molecular dynamics simulations.
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2024-11-12 |
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coptr
|
public |
Accurate and robust inference of microbial growth dynamics from metagenomic sequencing reads.
|
2024-11-12 |
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orthodb
|
public |
Interface to OrthoDB REST API.
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2024-11-12 |
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dnaio
|
public |
Read and write FASTA and FASTQ files efficiently
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2024-11-12 |
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cellprofiler
|
public |
CellProfiler is free, open-source software for quantitative analysis of biological images.
|
2024-11-12 |
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matchms
|
public |
Python library for fuzzy comparison of mass spectrum data and other Python objects
|
2024-11-12 |
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metaphor
|
public |
Metaphor - Metagenomic Pipeline for Short Reads
|
2024-11-11 |
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squirrel
|
public |
Some QUIck Reconstruction to Resolve Evolutionary Links
|
2024-11-10 |
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lamps
|
public |
Liverpool Annotation of metabolites using Mass Spectrometry
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2024-11-10 |
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r-remapenrich
|
public |
Bioinformatics tools to compute statistical enrichment of geonomic regions for ReMap peaks
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2024-11-10 |
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gadma
|
public |
Genetic Algorithm for Demographic Inference
|
2024-11-07 |
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bioblend
|
public |
A Python library for interacting with the Galaxy API.
|
2024-11-07 |
|
bam2plot
|
public |
Plot of coverage from bam file
|
2024-11-07 |
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sigprofilermatrixgenerator
|
public |
SigProfiler matrix generator tool.
|
2024-11-07 |
|
trtools
|
public |
Toolkit for genome-wide analysis of tandem repeats
|
2024-11-07 |
|
zdb
|
public |
zDB is both a bacterial comparative genomics pipeline and a tool to visualize the results
|
2024-11-06 |
|
bftools
|
public |
Bio-Formats Command line tools
|
2024-11-06 |
|
argparse2tool
|
public |
Instrument for forming Galaxy XML and CWL tool descriptions from argparse arguments
|
2024-11-05 |
|
pangolin
|
public |
Phylogenetic Assignment of Named Global Outbreak LINeages
|
2024-11-05 |
|
snipe
|
public |
SRA-Scale sequence QC and analysis
|
2024-11-05 |
|
perl-ole-storage_lite
|
public |
Read and write OLE storage files.
|
2024-11-05 |
|
seqspec
|
public |
File format that describes data generated from genomics experiments. File format and seqspec tool enable uniform processing of genomics data.
|
2024-11-05 |
|
perl-url-encode
|
public |
Encoding and decoding of application/x-www-form-urlencoded encoding.
|
2024-11-05 |
|
bubblegun
|
public |
BubbleGun is a tool for detecting bubbles and superbubbles in GFA graphs, and reports them and their nested structures.
|
2024-11-05 |
|
tinscan
|
public |
Find alignment signatures characteristic of transposon insertion sites.
|
2024-11-05 |
|
decom
|
public |
decOM: Similarity-based microbial source tracking for contamination assessment of ancient oral samples using k-mer-based methods
|
2024-11-05 |
|
tiberius
|
public |
Tiberius is a programme for quantifying and analysing genetic sequence data.
|
2024-11-04 |
|
mimeo
|
public |
Scan genomes for internally repeated sequences, elements which are repetitive in another species, or high-identity HGT candidate regions between species.
|
2024-11-04 |
|
buscolite
|
public |
buscolite: busco analysis for gene predictions
|
2024-11-04 |
|
nf-test
|
public |
nf-test is a simple test framework for Nextflow pipelines.
|
2024-11-04 |
|
gfftk
|
public |
GFFtk: genome annotation GFF3 tool kit
|
2024-11-04 |
|
eagle2
|
public |
The Eagle software estimates haplotype phase either within a genotyped cohort or using a phased reference panel.
|
2024-11-04 |
|
bioutils
|
public |
miscellaneous simple bioinformatics utilities and lookup tables
|
2024-11-04 |
|
msa4u
|
public |
A simple visualisation tool for Multiple Sequence Alignment.
|
2024-11-03 |
|
seqkit
|
public |
a cross-platform and ultrafast toolkit for FASTA/Q file manipulation
|
2024-11-03 |
|
gsmap
|
public |
gsMap (genetically informed spatial mapping of cells for complex traits)
|
2024-11-02 |
