| Package Name | Access | Summary | Updated |
|---|---|---|---|
| noise2read | public | Turn noise to read | 2025-04-22 |
| gmwi2 | public | Enhanced Health Status Prediction from Gut Microbiome Taxonomic Profiles | 2025-04-22 |
| dupsifter | public | A tool for PCR duplicate marking of WGBS (and WGS) data. | 2025-04-22 |
| decom | public | decOM: Similarity-based microbial source tracking for contamination assessment of ancient oral samples using k-mer-based methods | 2025-04-22 |
| pneumo-typer | public | Pneumo-Typer is a high-throughput capsule genotype visualization tool with integrated serotype and sequence type prediction for Streptococcus pneumoniae | 2025-04-22 |
| go-figure | public | GO-Figure! offers a simple solution for command-line plotting of informative summary visualisations of lists of GO terms, designed to support exploratory data analyses and multiple dataset comparisons. | 2025-04-22 |
| dnoise | public | Denoise sequence data sets from Illumina using distance corrected according to the entropy of each codon position | 2025-04-22 |
| r-metablastr | public | The metablastr package harnesses the power of BLAST by providing interface functions between it and R. | 2025-04-22 |
| transannot | public | TransAnnot: a fast transcriptome annotation pipeline. | 2025-04-22 |
| hifieval | public | Evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads) | 2025-04-22 |
| solote | public | A conversion utility is conveniently packaged with SoloTE, in order to tranform the RepeatMasker out file to the BED format required by SoloTE | 2025-04-22 |
| haplink | public | Viral haplotype calling via linkage disequilibrium | 2025-04-22 |
| magus-msa | public | Multiple Sequence Alignment using Graph Clustering | 2025-04-22 |
| ale-core | public | ALE: Assembly Likelihood Estimator. Core C implemented scoring programs only without supplementary plotting scripts. | 2025-04-22 |
| tracknado | public | CLI library to generate UCSC trackhubs from sequencing data | 2025-04-22 |
| aligncov | public | Obtain tidy alignment coverage info from sorted BAM files | 2025-04-22 |
| allo | public | Multi-mapped read rescue strategy for gene regulatory analyses | 2025-04-22 |
| mira-moods | public | MOODS: Motif Occurrence Detection Suite | 2025-04-22 |
| gimbleprep | public | Preprocess fasta, bam and vcf files ready to be used by gimble | 2025-04-22 |
| rsrq | public | A minimal Redis-backed queue system. | 2025-04-22 |
| eternafold | public | RNA structure prediction algorithm improved through crowdsourced training data | 2025-04-22 |
| ksnp | public | k-mer based haplotype assembly | 2025-04-22 |
| tcdemux | public | Demultiplex files and prepare reads for the target capture analysis pipeline. | 2025-04-22 |
| cmsearch_tblout_deoverlap | public | cmsearch-deoverlap.pl: remove lower scoring overlaps from cmsearch | 2025-04-22 |
| rich-msa | public | A Rich renderable for viewing Multiple Sequence Alignments in the terminal. | 2025-04-22 |
