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probcons
|
public |
PROBCONS is a probabilistic consistency-based multiple sequence alignment
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2024-12-06 |
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cgat-apps
|
public |
Computational Genomics Analysis Toolkit.
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2024-12-06 |
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phylip
|
public |
Package of programs for inferring phylogenies
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2024-12-06 |
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nordic
|
public |
NORDic: a Network-Oriented package for the Repurposing of Drugs
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2024-12-06 |
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jarvis3
|
public |
Improved encoder for genomic sequences.
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2024-12-06 |
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fc
|
public |
Accurate Assembly of Full-length Consensus for Viral Quasispecies.
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2024-12-06 |
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mzpaf
|
public |
HUPO-PSI Peptide peak annotation format
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2024-12-06 |
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anarci
|
public |
ANARCI: Antibody Numbering and Antigen Receptor ClassIfication
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2024-12-06 |
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varifier
|
public |
varifier: variant call verification
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2024-12-06 |
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ltr_retriever
|
public |
Sensitive and accurate identification of LTR retrotransposons
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2024-12-06 |
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tesorter
|
public |
Lineage-level classification of transposable elements using conserved protein domains.
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2024-12-06 |
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optilcms
|
public |
Pipeline for processing LC-MS raw data with optimized parameters.
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2024-12-06 |
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mm2plus
|
public |
Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
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2024-12-06 |
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sap
|
public |
Pairwise structure alignment via double dynamic programming
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2024-12-06 |
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phytop
|
public |
Phytop: A tool for visualizing and recognizing signals of incomplete lineage sorting and hybridization using species trees output from ASTRAL
|
2024-12-06 |
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nextstrain-cli
|
public |
The Nextstrain command-line interface (CLI)
|
2024-12-06 |
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pytrf
|
public |
a fast Python package for finding tandem repeat sequences
|
2024-12-06 |
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amplicon_coverage_plot
|
public |
Generate an amplicon coverage plot
|
2024-12-05 |
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rmblast
|
public |
RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST+ suite.
|
2024-12-05 |
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cellqc
|
public |
Cellqc standardizes the qualiy control of single-cell RNA-Seq (scRNA) data to render clean feature count matrices.
|
2024-12-05 |
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cgecore
|
public |
Center for Genomic Epidemiology Core Module
|
2024-12-05 |
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sistr_cmd
|
public |
Salmonella In Silico Typing Resource (SISTR) commandline tool for serovar prediction
|
2024-12-05 |
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dysgu
|
public |
A collection of tools for calling structural variants using short or long reads
|
2024-12-05 |
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pplacer
|
public |
Pplacer places query sequences on a fixed reference phylogenetic tree to maximize phylogenetic likelihood or posterior probability according to a reference alignment.
|
2024-12-05 |
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busco
|
public |
Assessment of assembly completeness using Universal Single Copy Orthologs.
|
2024-12-05 |
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foldmason
|
public |
Multiple Protein Structure Alignment at Scale with FoldMason
|
2024-12-05 |
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bwa-mem2
|
public |
The next version of bwa-mem
|
2024-12-05 |
|
perl-bio-samtools
|
public |
Read SAM/BAM files
|
2024-12-05 |
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mosdepth
|
public |
Fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing.
|
2024-12-05 |
|
ppanggolin
|
public |
PPanGGOLiN: Depicting microbial species diversity via a Partitioned PanGenome Graph
|
2024-12-05 |
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star-fusion
|
public |
STAR-Fusion fusion variant caller. All dependencies required to run FusionInspector and FusionAnnotator are included.
|
2024-12-05 |
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mustang
|
public |
Mustang is a program that implements an algorithm for structural alignment of multiple protein structures.
|
2024-12-04 |
|
bamscale
|
public |
BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks.
|
2024-12-04 |
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flexsweep
|
public |
A versatile tool for detecting selective sweeps
|
2024-12-04 |
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parnas
|
public |
Representative taxon sampling from phylogenetic trees
|
2024-12-04 |
|
gambit
|
public |
Tool for rapid taxonomic identification of microbial pathogens
|
2024-12-04 |
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trust4
|
public |
TCR and BCR assembly from bulk or single-cell RNA-seq data
|
2024-12-04 |
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mashmap
|
public |
A fast approximate aligner for long DNA sequences.
|
2024-12-04 |
|
alignlib-lite
|
public |
Simple wrapper around alignlib C++ library for sequence alignment
|
2024-12-04 |
|
ntedit
|
public |
Ultrafast, lightweight, scalable genome assembly polishing, and SNV detection & annotation
|
2024-12-03 |
|
ntroot
|
public |
Ancestry inference from genomic data
|
2024-12-03 |
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apscale
|
public |
Advanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding data.
|
2024-12-03 |
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liftover
|
public |
A Python package for converting point coordinates between genome assemblies, inspired by pyliftover.
|
2024-12-03 |
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sneakernet-qc
|
public |
A QC pipeline for raw reads
|
2024-12-03 |
|
cell2cell
|
public |
Inferring cell-cell interactions from transcriptomes with cell2cell
|
2024-12-03 |
|
cadd-scripts
|
public |
CADD scripts release for offline scoring
|
2024-12-03 |
|
rotate
|
public |
Simple program to rotate a circular sequence to start at a given position or string.
|
2024-12-03 |
|
versionix
|
public |
Get version of any tools.
|
2024-12-03 |
|
fastplong
|
public |
Ultra-fast preprocessing and quality control for long-read sequencing data.
|
2024-12-03 |
|
quota_anchor
|
public |
Strand and WGD aware syntenic gene identification
|
2024-12-03 |
