| Package Name | Access | Summary | Updated |
|---|---|---|---|
| occultercut | public | A package for measuring the local GC-content bias in genomes and fungal species | 2025-04-22 |
| bed2gff | public | BED-to-GFF3 converter that runs in parallel | 2025-04-22 |
| monopogen | public | Monopogen is an analysis package for SNV calling from single-cell sequencing datasets generated from single cell RNA 10x 5', 10x 3', single ATAC-seq technoloiges, scDNA-seq, etc. | 2025-04-22 |
| rnanorm | public | Common RNA-seq normalization methods | 2025-04-22 |
| bed2gtf | public | A high-performance BED-to-GTF converter written in Rust | 2025-04-22 |
| cgelib | public | This package will in time replace the cgecore package. The package contains classes and functions intended to be utilized across the CGE tools. | 2025-04-22 |
| dropkick | public | Automated scRNA-seq filtering | 2025-04-22 |
| terrace | public | TERRACE is an assembler for circular RNAs. | 2025-04-22 |
| itol-config | public | Package to create iTOL config files | 2025-04-22 |
| memote | public | the genome-scale metabolic model test suite | 2025-04-22 |
| r-deconcell | public | DeconCell is an statitsical framework for generating cell proportions predictive models using bulk expresion data. It currently has pre-calculated models | 2025-04-22 |
| pycov3 | public | Generate cov3 files used in DEMIC | 2025-04-22 |
| cgt | public | Calculate a core genome threshold (cgt) from metagenome data | 2025-04-22 |
| skyline2isocor | public | Convert skyline output to IsoCor input format | 2025-04-22 |
| rtk2 | public | rtk2 - a CLI rarefaction toolkit for OTU tables | 2025-04-22 |
| floria | public | Floria is method for recovering strain-level haplotypes and clusters of reads from metagenomic short or long read sequencing data by haplotype phasing. | 2025-04-22 |
| revoluzer | public | Genome rearrangement analysis tools | 2025-04-22 |
| massdash | public | MassDash is a streamlined DIA mass spec visualization, analysis, optimization, and rapid prototyping. | 2025-04-22 |
| mgatk | public | Mitochondrial genome analysis toolkit. | 2025-04-22 |
| tntblast | public | Searching DNA/RNA sequence databases with PCR and/or probe queries | 2025-04-22 |
| maegatk | public | Mitochondrial Alteration Enrichment and Genome Analysis Toolkit | 2025-04-22 |
| htsinfer | public | HTSinfer infers metadata from Illumina high throughput sequencing (HTS) data | 2025-04-22 |
| evigene | public | A genome informatics project for Evidence Directed Gene Construction for Eukaryotes | 2025-04-22 |
| attotree | public | rapid estimation of phylogenetic trees using sketching | 2025-04-22 |
| pygenetic_code | public | Python code for translating sequences using different NCBI translation tables and genetic codes | 2025-04-22 |
