| Package Name | Access | Summary | Updated |
|---|---|---|---|
| biodigest | public | In silico Validation of Disease and Gene Sets, Clusterings or Subnetworks (DIGEST) | 2025-04-22 |
| ltr_finder_parallel | public | Perl wrapper to parallelize ltr_finder | 2025-04-22 |
| segalign-full | public | SegAlign: A Scalable GPU-Based Whole Genome Aligner | 2025-04-22 |
| pass | public | Proteome Assembler with Short Sequence peptides | 2025-04-22 |
| recgraph | public | Optimal sequence-to-graph alignment with recombinations | 2025-04-22 |
| multirnafold | public | RNA/DNA secondary structure prediction for one, two, or many interacting strands | 2025-04-22 |
| pybigtools | public | pybigtools: Python bindings to the Bigtools Rust library for high-performance BigWig and BigBed I/O | 2025-04-22 |
| hmftools-cuppa | public | Predict tissue of origin for tumor samples from WGTS data. | 2025-04-22 |
| pytransaln | public | Translation-guided nucleotide alignment for coding sequences | 2025-04-22 |
| r-linxreport | public | LINX Result Reporter | 2025-04-22 |
| hmftools-mark-dups | public | Mark read duplicates and form consenus sequences | 2025-04-22 |
| gffpandas | public | Parse GFF3 into Pandas dataframes | 2025-04-22 |
| r-scevan | public | Single CEll Variational Aneuploidy aNalysis | 2025-04-22 |
| peer | public | A collection of Bayesian approaches to infer hidden determinants and their effects from gene expression profiles using factor analysis methods | 2025-04-22 |
| gametes | public | Tool for the generation of complex single SNP models | 2025-04-22 |
| r-chord | public | Predict HRD using somatic mutations contexts | 2025-04-22 |
| r-mutsigextractor | public | Extract mutational signatures from VCF files | 2025-04-22 |
| hmftools-virus-interpreter | public | Post-process VIRUSBreakend summary results. | 2025-04-22 |
| occultercut | public | A package for measuring the local GC-content bias in genomes and fungal species | 2025-04-22 |
| bed2gff | public | BED-to-GFF3 converter that runs in parallel | 2025-04-22 |
| monopogen | public | Monopogen is an analysis package for SNV calling from single-cell sequencing datasets generated from single cell RNA 10x 5', 10x 3', single ATAC-seq technoloiges, scDNA-seq, etc. | 2025-04-22 |
| rnanorm | public | Common RNA-seq normalization methods | 2025-04-22 |
| bed2gtf | public | A high-performance BED-to-GTF converter written in Rust | 2025-04-22 |
| cgelib | public | This package will in time replace the cgecore package. The package contains classes and functions intended to be utilized across the CGE tools. | 2025-04-22 |
| dropkick | public | Automated scRNA-seq filtering | 2025-04-22 |
