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bioconductor-easyrnaseq
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public |
Count summarization and normalization for RNA-Seq data
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2025-04-22 |
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bioconductor-director
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public |
A dynamic visualization tool of multi-level data
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2025-04-22 |
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bioconductor-msnid
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public |
Utilities for Exploration and Assessment of Confidence of LC-MSn Proteomics Identifications
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2025-04-22 |
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bioconductor-epivizrstandalone
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public |
Run Epiviz Interactive Genomic Data Visualization App within R
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2025-04-22 |
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bioconductor-edda
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public |
Experimental Design in Differential Abundance analysis
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2025-04-22 |
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bioconductor-epivizr
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public |
R Interface to epiviz web app
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2025-04-22 |
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bioconductor-encodexplorer
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public |
A compilation of ENCODE metadata
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2025-04-22 |
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bioconductor-empiricalbrownsmethod
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public |
Uses Brown's method to combine p-values from dependent tests
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2025-04-22 |
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bioconductor-biocgraph
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public |
Graph examples and use cases in Bioinformatics
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2025-04-22 |
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bioconductor-epivizrdata
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public |
Data Management API for epiviz interactive visualization app
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2025-04-22 |
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bioconductor-multiclust
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public |
multiClust: An R-package for Identifying Biologically Relevant Clusters in Cancer Transcriptome Profiles
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2025-04-22 |
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bioconductor-epigenomix
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public |
Epigenetic and gene transcription data normalization and integration with mixture models
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2025-04-22 |
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bioconductor-multiassayexperiment
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public |
Software for the integration of multi-omics experiments in Bioconductor
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2025-04-22 |
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bioconductor-ctc
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public |
Cluster and Tree Conversion.
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2025-04-22 |
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bioconductor-epivizrserver
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public |
WebSocket server infrastructure for epivizr apps and packages
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2025-04-22 |
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bioconductor-eudysbiome
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public |
Cartesian plot and contingency test on 16S Microbial data
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2025-04-22 |
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bioconductor-esetvis
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public |
Visualizations of expressionSet Bioconductor object
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2025-04-22 |
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bioconductor-eximir
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public |
R functions for the normalization of Exiqon miRNA array data
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2025-04-22 |
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bioconductor-exomepeak
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public |
The package is developed for the analysis of affinity-based epitranscriptome shortgun sequencing data from MeRIP-seq (maA-seq). It was built on the basis of the exomePeak MATLAB package (Meng, Jia, et al. "Exome-based analysis for RNA epigenome sequencing data." Bioinformatics 29.12 (2013): 1565-1567.) with new functions for differential analysis of two experimental conditions to unveil the dynamics in post-transcriptional regulation of the RNA methylome. The exomePeak R-package accepts and statistically supports multiple biological replicates, internally removes PCR artifacts and multi-mapping reads, outputs exome-based binding sites (RNA methylation sites) and detects differential post-transcriptional RNA modification sites between two experimental conditions in term of percentage rather the absolute amount. The package is still under active development, and we welcome all biology and computation scientist for all kinds of collaborations and communications. Please feel free to contact Dr. Jia Meng <[email protected]> if you have any questions.
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2025-04-22 |
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bioconductor-findmyfriends
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public |
Microbial Comparative Genomics in R
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2025-04-22 |
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bioconductor-pathostat
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public |
PathoStat Statistical Microbiome Analysis Package
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2025-04-22 |
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bioconductor-flowmatch
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public |
Matching and meta-clustering in flow cytometry
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2025-04-22 |
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bioconductor-generxcluster
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public |
gRx Differential Clustering
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2025-04-22 |
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bioconductor-batchqc
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public |
Batch Effects Quality Control Software
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2025-04-22 |
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bioconductor-geneselector
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public |
The term 'GeneSelector' refers to a filter selecting those genes which are consistently identified as differentially expressed using various statistical procedures. 'Selected' genes are those present at the top of the list in various ranking methods (currently 14). In addition, the stability of the findings can be taken into account in the final ranking by examining perturbed versions of the original data set, e.g. by leaving samples, swapping class labels, generating bootstrap replicates or adding noise. Given multiple ranked lists, one can use aggregation methods in order to find a synthesis.
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2025-04-22 |
