|
bioconductor-widgettools
|
public |
Creates an interactive tcltk widget
|
2025-04-22 |
|
bioconductor-discordant
|
public |
The Discordant Method: A Novel Approach for Differential Correlation
|
2025-04-22 |
|
bioconductor-copa
|
public |
Functions to perform cancer outlier profile analysis.
|
2025-04-22 |
|
bioconductor-cancerclass
|
public |
Development and validation of diagnostic tests from high-dimensional molecular data
|
2025-04-22 |
|
bioconductor-profilescoredist
|
public |
Profile score distributions
|
2025-04-22 |
|
bioconductor-fmcsr
|
public |
Mismatch Tolerant Maximum Common Substructure Searching
|
2025-04-22 |
|
bioconductor-genie3
|
public |
GEne Network Inference with Ensemble of trees
|
2025-04-22 |
|
bioconductor-ibbig
|
public |
Iterative Binary Biclustering of Genesets
|
2025-04-22 |
|
bioconductor-dropletutils
|
public |
Utilities for Handling Single-Cell Droplet Data
|
2025-04-22 |
|
bioconductor-deqms
|
public |
a tool to perform statistical analysis of differential protein expression for quantitative proteomics data.
|
2025-04-22 |
|
r-tigger
|
public |
Infers the V genotype of an individual from immunoglobulin (Ig) repertoire sequencing data (AIRR-Seq, Rep-Seq). Includes detection of any novel alleles. This information is then used to correct existing V allele calls from among the sample sequences. Citations: Gadala-Maria, et al (2015) <doi:10.1073/pnas.1417683112>.
|
2025-04-22 |
|
r-mvr
|
public |
This is a non-parametric method for joint adaptive mean-variance regularization and variance stabilization of high-dimensional data. It is suited for handling difficult problems posed by high-dimensional multivariate datasets (p >> n paradigm). Among those are that the variance is often a function of the mean, variable-specific estimators of variances are not reliable, and tests statistics have low powers due to a lack of degrees of freedom. Key features include: (i) Normalization and/or variance stabilization of the data, (ii) Computation of mean-variance-regularized t-statistics (F-statistics to follow), (iii) Generation of diverse diagnostic plots, (iv) Computationally efficient implementation using C/C++ interfacing and an option for parallel computing to enjoy a faster and easier experience in the R environment.
|
2025-04-22 |
|
r-airr
|
public |
Schema definitions and read, write and validation tools for data formatted in accordance with the AIRR Data Representation schemas defined by the AIRR Community <http://docs.airr-community.org>.
|
2025-04-22 |
|
r-lncpipereporter
|
public |
Automatically Aggregating and Summarizing lncRNA Analysis Results for Interactive Report
|
2025-04-22 |
|
bioconductor-metavizr
|
public |
R Interface to the metaviz web app for interactive metagenomics data analysis and visualization
|
2025-04-22 |
|
r-bedr
|
public |
Genomic regions processing using open-source command line tools such as 'BEDTools', 'BEDOPS' and 'Tabix'. These tools offer scalable and efficient utilities to perform genome arithmetic e.g indexing, formatting and merging. bedr API enhances access to these tools as well as offers additional utilities for genomic regions processing.
|
2025-04-22 |
|
bioconductor-scrnaseq
|
public |
Collection of Public Single-Cell RNA-Seq Datasets
|
2025-04-22 |
|
bioconductor-isee
|
public |
Interactive SummarizedExperiment Explorer
|
2025-04-22 |
|
r-facets
|
public |
Cellular Fraction and Copy Numbers from Tumor Sequencing
|
2025-04-22 |
|
bioconductor-tissueenrich
|
public |
Tissue-specific gene enrichment analysis
|
2025-04-22 |
|
r-pctgcdata
|
public |
Provides GC percentage of a 1 kilobase window at a genomic position for different builds of human and mouse genomes.
|
2025-04-22 |
|
r-nabor
|
public |
An R wrapper for 'libnabo', an exact or approximate k nearest neighbour library which is optimised for low dimensional spaces (e.g. 3D)
|
2025-04-22 |
|
bioconductor-enrichmentbrowser
|
public |
Seamless navigation through combined results of set-based and network-based enrichment analysis
|
2025-04-22 |
|
r-ggbiplot
|
public |
A biplot based on ggplot2
|
2025-04-22 |
|
bioconductor-rnaseqsamplesize
|
public |
RnaSeqSampleSize
|
2025-04-22 |
