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Package Name Access Summary Updated
bioconductor-rnainteractmapk public Mapping of Signalling Networks through Synthetic Genetic Interaction Analysis by RNAi 2025-04-22
bioconductor-champ public Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC 2025-04-22
bioconductor-metacyto public MetaCyto: A package for meta-analysis of cytometry data 2025-04-22
r-mess public A mixed collection of useful and semi-useful diverse statistical functions, some of which may even be referenced in The R Primer book. 2025-04-22
bioconductor-mait public Statistical Analysis of Metabolomic Data 2025-04-22
bioconductor-amplican public Automated analysis of CRISPR experiments 2025-04-22
r-plsgenomics public Routines for PLS-based genomic analyses, implementing PLS methods for classification with microarray data and prediction of transcription factor activities from combined ChIP-chip analysis. The >=1.2-1 versions include two new classification methods for microarray data: GSIM and Ridge PLS. The >=1.3 versions includes a new classification method combining variable selection and compression in logistic regression context: logit-SPLS; and an adaptive version of the sparse PLS. 2025-04-22
bioconductor-affyqcreport public QC Report Generation for affyBatch objects 2025-04-22
bioconductor-phenotest public Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation. 2025-04-22
bioconductor-mulder2012 public Predicting functional networks and modules of chromatin factors controlling adult stem cell fate from RNA interference screens 2025-04-22
bioconductor-htsanalyzer public Gene set over-representation, enrichment and network analyses for high-throughput screens 2025-04-22
bioconductor-gesper public Gene-Specific Phenotype EstimatoR 2025-04-22
bioconductor-egad public Extending guilt by association by degree 2025-04-22
bioconductor-affypara public Parallelized preprocessing methods for Affymetrix Oligonucleotide Arrays 2025-04-22
bioconductor-spikeinsubset public Part of Affymetrix's Spike-In Experiment Data 2025-04-22
bioconductor-spikein public Affymetrix Spike-In Experiment Data 2025-04-22
bioconductor-arraymvout public multivariate outlier detection for expression array QA 2025-04-22
bioconductor-rhvdm public A R implementation of HVDM (Genome Biol 2006, V7(3) R25) 2025-04-22
bioconductor-predasampledata public expression and copy number data on clear cell renal carcinoma samples 2025-04-22
bioconductor-rnaseqr public RNASeqR: an R package for automated two-group RNA-Seq analysis workflow 2025-04-22
bioconductor-mvoutdata public affy and illumina raw data for assessing outlier detector performance 2025-04-22
bioconductor-maqcsubsetafx public MAQC data subset for the Affymetrix platform 2025-04-22
bioconductor-maqcsubset public Experimental Data Package: MAQCsubset 2025-04-22
bioconductor-skewr public Visualize Intensities Produced by Illumina's Human Methylation 450k BeadChip 2025-04-22
bioconductor-enmix public Quality control and analysis tools for Illumina DNA methylation BeadChip 2025-04-22

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