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hmmcopy
|
public |
C++ based programs for analyzing BAM files and preparing read counts -- used with bioconductor-hmmcopy
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2025-09-04 |
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mawk
|
public |
mawk is an interpreter for the AWK Programming Language.
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2025-09-04 |
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haploclique
|
public |
Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletions from NGS data.
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2025-09-04 |
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r-classdiscovery
|
public |
Defines the classes used for "class discovery" problems in the OOMPA project (<http://oompa.r-forge.r-project.org/>). Class discovery primarily consists of unsupervised clustering methods with attempts to assess their statistical significance.
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2025-09-04 |
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nanopolish
|
public |
Signal-level algorithms for MinION data.
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2025-09-04 |
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fasttree
|
public |
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences.
|
2025-09-04 |
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pyfaidx
|
public |
pyfaidx: efficient pythonic random access to fasta subsequences
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2025-09-03 |
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chewbbaca
|
public |
A complete suite for gene-by-gene schema creation and strain identification.
|
2025-09-03 |
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biobb_common
|
public |
Biobb_common is the base package required to use the biobb packages.
|
2025-09-03 |
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genomedata
|
public |
Tools for accessing large amounts of genomic data.
|
2025-09-02 |
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pureclip
|
public |
PureCLIP is a tool to detect protein-RNA interaction footprints from single-nucleotide CLIP-seq data, such as iCLIP and eCLIP.
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2025-09-02 |
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perl-term-table
|
public |
Format a header and rows into a table
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2025-09-02 |
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rgi
|
public |
This tool provides a preliminary annotation of your DNA sequence(s) based upon the data available in The Comprehensive Antibiotic Resistance Database (CARD). Hits to genes tagged with Antibiotic Resistance ontology terms will be highlighted. As CARD expands to include more pathogens, genomes, plasmids, and ontology terms this tool will grow increasingly powerful in providing first-pass detection of antibiotic resistance associated genes. See license at CARD website.
|
2025-09-01 |
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vcfanno
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public |
Annotate a VCF with other VCFs/BEDs/tabixed files.
|
2025-09-01 |
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perl-parallel-forkmanager
|
public |
A simple parallel processing fork manager
|
2025-08-30 |
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perl-sys-info-driver-linux
|
public |
Linux driver for Sys::Info
|
2025-08-30 |
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perl-net-http
|
public |
Low-level HTTP connection (client).
|
2025-08-30 |
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swarm
|
public |
A robust and fast clustering method for amplicon-based studies.
|
2025-08-28 |
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mreps
|
public |
mreps is a flexible and efficient software for identifying serial repeats (usually called tandem repeats) in DNA sequences.
|
2025-08-28 |
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perl-html-tableextract
|
public |
Perl module for extracting the content contained in tables within an HTML document, either as text or encoded element trees.
|
2025-08-28 |
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perl-log-any
|
public |
Bringing loggers and listeners together.
|
2025-08-28 |
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perl-file-copy-recursive-reduced
|
public |
Recursive copying of files and directories within Perl 5 toolchain.
|
2025-08-28 |
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perl-getopt-long-descriptive
|
public |
Getopt::Long, but simpler and more powerful.
|
2025-08-28 |
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perl-moosex-getopt
|
public |
A Moose role for processing command line options.
|
2025-08-28 |
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solvebio
|
public |
The SolveBio Python client.
|
2025-08-28 |
