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humann2
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public |
HUMAnN2: The HMP Unified Metabolic Analysis Network 2
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2023-06-16 |
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python-tripal
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public |
Tripal API library
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2023-06-16 |
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myriad
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public |
Simple distributed computing.
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2023-06-16 |
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perl-sub-uplevel
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public |
apparently run a function in a higher stack frame
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2023-06-16 |
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perl-io-all
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public |
Combines all of the best Perl IO modules into a single nifty object oriented interface
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2023-06-16 |
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perl-yaml-tiny
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public |
Read/Write YAML files with as little code as possible
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2023-06-16 |
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svviz
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public |
A read visualizer for structural variants
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2023-06-16 |
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perl-archive-tar
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public |
Manipulates TAR archives
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2023-06-16 |
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hgtools
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public |
Classes and setuptools plugin for Mercurial and Git repositories
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2023-06-16 |
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minepy
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public |
minepy - Maximal Information-based Nonparametric Exploration
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2023-06-16 |
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beast
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public |
BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC
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2023-06-16 |
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phylopandas
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public |
Pandas for phylogenetics
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2023-06-16 |
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perl-hash-merge
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public |
Merges arbitrarily deep hashes into a single hash
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2023-06-16 |
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perl-extutils-manifest
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public |
Utilities to write and check a MANIFEST file
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2023-06-16 |
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perl-net-ssleay
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public |
Perl extension for using OpenSSL
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2023-06-16 |
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bioconductor-cellgrowth
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public |
Fitting cell population growth models
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2023-06-16 |
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selectsequencesfrommsa
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public |
Tool to select representative sequences from a multiple sequence alignment
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2023-06-16 |
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bioconductor-rmat
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public |
This package is an R version of the package MAT and contains functions to parse and merge Affymetrix BPMAP and CEL tiling array files (using C++ based Fusion SDK and Bioconductor package affxparser), normalize tiling arrays using sequence specific models, detect enriched regions from ChIP-chip experiments. Note: users should have GSL and GenomeGraphs installed. Windows users: 'consult the README file available in the inst directory of the source distribution for necessary configuration instructions'. Snow Leopard users can take advantage of increase speed with Grand Central Dispatch!
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2023-06-16 |
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bioconductor-netreg
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public |
Network-Regularized Regression Models
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2023-06-16 |
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bioconductor-hicrep
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public |
Measuring the reproducibility of Hi-C data
|
2023-06-16 |
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bioconductor-mirsynergy
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public |
Mirsynergy
|
2023-06-16 |
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bioconductor-netbiov
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public |
A package for visualizing complex biological network
|
2023-06-16 |
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binsanity
|
public |
Method to cluster contigs based a biphasic method with coverage and composition
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2023-06-16 |
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r-scrm
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public |
A coalescent simulator that allows the rapid simulation of biological sequences under neutral models of evolution. Different to other coalescent based simulations, it has an optional approximation parameter that allows for high accuracy while maintaining a linear run time cost for long sequences. It is optimized for simulating massive data sets as produced by Next- Generation Sequencing technologies for up to several thousand sequences.
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2023-06-16 |
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bioconductor-arraytools
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public |
geneChip Analysis Package
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2023-06-16 |
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bioconductor-bgafun
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public |
BGAfun A method to identify specifity determining residues in protein families
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2023-06-16 |
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bioconductor-plw
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public |
Probe level Locally moderated Weighted t-tests.
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2023-06-16 |
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bioconductor-bac
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public |
Bayesian Analysis of Chip-chip experiment
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2023-06-16 |
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bioconductor-affypdnn
|
public |
Probe Dependent Nearest Neighbours (PDNN) for the affy package
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2023-06-16 |
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bioconductor-xbseq
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public |
Test for differential expression for RNA-seq data
|
2023-06-16 |
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bioconductor-splicegear
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public |
splicegear
|
2023-06-16 |
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bioconductor-mdgsa
|
public |
Multi Dimensional Gene Set Analysis.
|
2023-06-16 |
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bioconductor-sushi
|
public |
Tools for visualizing genomics data
|
2023-06-16 |
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bioconductor-roleswitch
|
public |
Infer miRNA-mRNA interactions using paired expression data from a single sample
|
2023-06-16 |
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bioconductor-rgalaxy
|
public |
Make an R function available in the Galaxy web platform
|
2023-06-16 |
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bioconductor-splicer
|
public |
An R package for classification of alternative splicing and prediction of coding potential from RNA-seq data.
|
2023-06-16 |
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r-coloc
|
public |
Performs the colocalisation tests described in Plagnol et al (2009) <doi:10.1093/biostatistics/kxn039>, Wallace et al (2013) <doi:10.1002/gepi.21765> and Giambartolomei et al (2013) <doi:10.1371/journal.pgen.1004383>.
|
2023-06-16 |
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bioconductor-genomegraphs
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public |
Plotting genomic information from Ensembl
|
2023-06-16 |
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pyimzml
|
public |
Parser for conversion of imzML 1.1.0 files
|
2023-06-16 |
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bioconductor-genominator
|
public |
Analyze, manage and store genomic data
|
2023-06-16 |
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bioconductor-tssi
|
public |
Identify and normalize transcription start sites in high-throughput sequencing data.
|
2023-06-16 |
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bioconductor-annotationfuncs
|
public |
Annotation translation functions
|
2023-06-16 |
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bioconductor-cancermutationanalysis
|
public |
Cancer mutation analysis
|
2023-06-16 |
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bioconductor-bayespeak
|
public |
Bayesian Analysis of ChIP-seq Data
|
2023-06-16 |
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bioconductor-tspair
|
public |
Top Scoring Pairs for Microarray Classification
|
2023-06-16 |
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bioconductor-chimera
|
public |
A package for secondary analysis of fusion products
|
2023-06-16 |
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bioconductor-qualifier
|
public |
Quality Control of Gated Flow Cytometry Experiments
|
2023-06-16 |
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bioconductor-rnaseqmap
|
public |
rnaSeq secondary analyses
|
2023-06-16 |
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bioconductor-flowcl
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public |
Semantic labelling of flow cytometric cell populations
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2023-06-16 |
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bioconductor-outlierd
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public |
Outlier detection using quantile regression on the M-A scatterplots of high-throughput data
|
2023-06-16 |
