| Package Name | Access | Summary | Updated |
|---|---|---|---|
| bloocoo | public | Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint. As an example, it can correct whole human genome re-sequencing reads at 70 x coverage with less than 4GB of memory. | 2025-04-22 |
| pyvolve | public | Pyvolve is an open-source Python module for simulating sequences along a phylogenetic tree according to continuous-time Markov models of sequence evolution. Please cite: Spielman, S.J., and Wilke, C.O. (2015). Pyvolve: A Flexible Python Module for Simulating Sequences along Phylogenies. PLOS ONE 10, e0139047. | 2025-04-22 |
| perl-bio-mlst-check | public | Multilocus sequence type checking using blast | 2025-04-22 |
| bioconductor-biocfilecache | public | Manage Files Across Sessions | 2025-04-22 |
| libssw | public | An SIMD Smith-Waterman C/C++/Python/Java Library for Use in Genomic Applications. | 2025-04-22 |
| perl-file-touch | public | update file access and modification times, optionally creating files if needed | 2025-04-22 |
| perl-test-mockmodule | public | Override subroutines in a module for unit testing | 2025-04-22 |
| perl-super | public | control superclass method dispatch | 2025-04-22 |
| sloika | public | Sloika is Oxford Nanopore Technologies' software for training neural network models for base calling | 2025-04-22 |
| bioconductor-consensusov | public | Gene expression-based subtype classification for high-grade serous ovarian cancer | 2025-04-22 |
| mamotif | public | An integrative toolkit for detecting cell type-specific regulators | 2025-04-22 |
| motifscan | public | A package for motif discovery and motif enrichment analysis | 2025-04-22 |
| scrappie | public | Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group | 2025-04-22 |
| bioconductor-zfpkm | public | A suite of functions to facilitate zFPKM transformations | 2025-04-22 |
| bioconductor-interminer | public | R Interface with InterMine-Powered Databases | 2025-04-22 |
| bioconductor-apeglm | public | Approximate posterior estimation for GLM coefficients | 2025-04-22 |
| microbecensus | public | A command-line tool for estimating average genome size from shotgun sequence data | 2025-04-22 |
| drax | public | A pipeline for Detecting Resistome Associated taXa. | 2025-04-22 |
| cannoli | public | Distributed execution of bioinformatics tools on Apache Spark | 2025-04-22 |
| fast5-research | public | ONT Research fast5 read/write package | 2025-04-22 |
| protk | public | protk (Proteomics toolkit) | 2025-04-22 |
| chromosomer | public | A reference-assisted assembly tool for producing draft chromosome sequences. | 2025-04-22 |
| bioformats | public | A collection of Python classes to handle bioinformatics data. | 2025-04-22 |
| telseq | public | A software for calculating telomere length | 2025-04-22 |
| skmer | public | Assembly-free and alignment-free tool for estimating genomic distances between genome-skims | 2025-04-22 |
