| Package Name | Access | Summary | Updated |
|---|---|---|---|
| mapsplice | public | MapSplice is a software for mapping RNA-seq data to reference genome for splice junction discovery that depends only on reference genome, and not on any further annotations. | 2025-06-10 |
| r-cimpl | public | No Summary | 2025-06-10 |
| mykrobe | public | Antibiotic resistance prediction in minutes | 2025-06-10 |
| whatshap | public | Phase genomic variants using DNA sequencing reads (haplotype assembly). | 2025-06-09 |
| somaticseq | public | An ensemble approach to accurately detect somatic mutations. | 2025-06-09 |
| mothur | public | This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community. | 2025-06-06 |
| bcalm | public | BCALM 2 is a bioinformatics tool for constructing the compacted de Bruijn graph from sequencing data. | 2025-06-06 |
| bcftools-gtc2vcf-plugin | public | Tools to convert Illumina and Affymetrix array intensity data files into VCF files. | 2025-06-06 |
| perl-file-find-rule | public | Alternative interface to File::Find. | 2025-06-05 |
| pasta | public | An implementation of the PASTA (Practical Alignment using Sate and TrAnsitivity) algorithm. | 2025-06-05 |
| bowtie2 | public | A fast and sensitive gapped read aligner. | 2025-06-03 |
| iced | public | The python module iced implements the ICE normalization of hic data. | 2025-06-03 |
| transit | public | TRANSIT | 2025-06-02 |
| freebayes | public | Bayesian haplotype-based polymorphism discovery and genotyping. | 2025-06-02 |
| bioconductor-dirichletmultinomial | public | Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data | 2025-06-02 |
| bioconductor-decipher | public | Tools for curating, analyzing, and manipulating biological sequences | 2025-05-29 |
| rsem | public | RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data. | 2025-05-29 |
| evidencemodeler | public | Evidence Modeler combines ab intio gene predictions, protein alignments, and transcript alignments into weighted consensus gene structures | 2025-05-29 |
| beagle-lib | public | general purpose library for evaluating the likelihood of sequence evolution on trees | 2025-05-29 |
| rtg-tools | public | RealTimeGenomics Tools -- Utilities for accurate VCF comparison and manipulation. | 2025-05-29 |
| entrez-direct | public | Entrez Direct (EDirect) is an advanced method for accessing the NCBI's set of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command-line arguments. Individual operations are combined to build multi-step queries. Record retrieval and formatting normally complete the process. | 2025-05-28 |
| mcl | public | MCL - a cluster algorithm for graphs | 2025-05-28 |
| r-sleuth | public | Tools for investigating RNA-Seq. | 2025-05-28 |
| metabat2 | public | Metagenome binning. | 2025-05-28 |
| arvados-python-client | public | Python API for Arvados | 2025-05-28 |
