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bioconductor-rsamtools
|
public |
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
|
2025-04-14 |
|
xtandem
|
public |
No Summary
|
2025-04-14 |
|
searchgui
|
public |
User-friendly graphical tool for using proteomics identification search engines.
|
2025-04-14 |
|
vcflib
|
public |
Command-line tools for manipulating VCF files.
|
2025-04-13 |
|
igv
|
public |
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics
data and annotations.
|
2025-04-13 |
|
solvebio
|
public |
The SolveBio Python client
|
2025-04-13 |
|
picard
|
public |
Java tools for working with NGS data in the BAM format
|
2025-04-13 |
|
perl-math-bigint
|
public |
Arbitrary size floating point math package
|
2025-04-13 |
|
bedops
|
public |
High-performance genomic feature operations.
|
2025-04-13 |
|
whatshap
|
public |
Phase genomic variants using DNA sequencing reads (haplotype assembly).
|
2025-04-12 |
|
picrust2
|
public |
PICRUSt: Phylogenetic Investigation of Communities by Reconstruction of Unobserved States
|
2025-04-10 |
|
kaptive
|
public |
Reports information about surface polysaccharide loci for Klebsiella pneumoniae species complex and Acinetobacter baumannii genome assemblies.
|
2025-04-10 |
|
mimeo
|
public |
Scan genomes for internally repeated sequences, elements which are repetitive in another species, or high-identity HGT candidate regions between species.
|
2025-04-10 |
|
plink2
|
public |
Whole genome association analysis toolset
|
2025-04-10 |
|
epa-ng
|
public |
Massively parallel phylogenetic placement of genetic sequences
|
2025-04-10 |
|
biskit
|
public |
A Python platform for structural bioinformatics.
|
2025-04-09 |
|
pymummer
|
public |
Wrapper for MUMmer.
|
2025-04-08 |
|
kma
|
public |
KMA is a mapping method designed to map raw reads directly against redundant databases, in an ultra-fast manner using seed and extend.
|
2025-04-08 |
|
last
|
public |
LAST finds & aligns related regions of sequences.
|
2025-04-08 |
|
mirtop
|
public |
Small RNA-seq annotation.
|
2025-04-08 |
|
ngmerge
|
public |
Merging paired-end reads and removing sequencing adapters.
|
2025-04-07 |
|
tirmite
|
public |
Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.
|
2025-04-07 |
|
hyphy
|
public |
An open-source software package for comparative sequence analysis using stochastic evolutionary models.
|
2025-04-06 |
|
fgbio
|
public |
A set of tools for working with genomic and high throughput sequencing data, including UMIs
|
2025-04-06 |
|
fwdpy11
|
public |
Forward-time population genetic simulation in Python.
|
2025-04-05 |
