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libsequence
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public |
A C++ class library for evolutionary genetics.
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2024-12-16 |
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meme
|
public |
Motif-based sequence analysis tools.
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2024-12-16 |
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pycluster
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public |
Clustering module for Python
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2024-12-16 |
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pindel
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public |
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data
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2024-12-16 |
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bioconductor-cytolib
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public |
C++ infrastructure for representing and interacting with the gated cytometry data
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2024-12-16 |
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perl-sanger-cgp-allelecount
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public |
Support code for NGS copy number algorithm
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2024-12-16 |
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perl-datetime-locale
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public |
Localization support for DateTime.pm
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2024-12-16 |
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alfred
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public |
BAM alignment statistics, feature counting and feature annotation
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2024-12-16 |
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trnascan-se
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public |
tRNA detection in large-scale genomic sequences
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2024-12-16 |
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rsem
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public |
RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data.
|
2024-12-16 |
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pasa
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public |
PASA, acronym for Program to Assemble Spliced Alignments (and pronounced 'pass-uh'), is a eukaryotic genome annotation tool that exploits spliced alignments of expressed transcript sequences to automatically model gene structures, and to maintain gene structure annotation consistent with the most recently available experimental sequence data. PASA also identifies and classifies all splicing variations supported by the transcript alignments.
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2024-12-16 |
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bioconductor-rhdf5lib
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public |
hdf5 library as an R package
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2024-12-16 |
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dxpy
|
public |
DNAnexus Platform API bindings for Python
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2024-12-16 |
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sentieon
|
public |
Accelerated performance bioinformatics tools for mapping and variant calling
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2024-12-16 |
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bioconductor-iterativebma
|
public |
The Iterative Bayesian Model Averaging (BMA) algorithm
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2024-12-16 |
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bioconductor-generecommender
|
public |
A gene recommender algorithm to identify genes coexpressed with a query set of genes
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2024-12-16 |
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bioconductor-subseq
|
public |
Subsampling of high-throughput sequencing count data
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2024-12-16 |
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bioconductor-rols
|
public |
An R interface to the Ontology Lookup Service
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2024-12-16 |
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bioconductor-specond
|
public |
Condition specific detection from expression data
|
2024-12-16 |
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bioconductor-pandar
|
public |
PANDA Algorithm
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2024-12-16 |
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wiggletools
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public |
The WiggleTools package allows genomewide data files to be manipulated as numerical functions, equipped with all the standard functional analysis operators (sum, product, product by a scalar, comparators), and derived statistics (mean, median, variance, stddev, t-test, Wilcoxon's rank sum test, etc).
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2024-12-16 |
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cyvcf2
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public |
A cython wrapper around htslib built for fast parsing of Variant Call Format (VCF) files
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2024-12-16 |
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bioconductor-a4core
|
public |
Automated Affymetrix Array Analysis Core Package
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2024-12-16 |
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expansionhunter
|
public |
A tool for estimating repeat sizes
|
2024-12-16 |
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bioconductor-biodist
|
public |
Different distance measures
|
2024-12-16 |
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bioconductor-plpe
|
public |
Local Pooled Error Test for Differential Expression with Paired High-throughput Data
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2024-12-16 |
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samtools
|
public |
Tools for dealing with SAM, BAM and CRAM files
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2024-12-16 |
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bioconductor-mipp
|
public |
Misclassification Penalized Posterior Classification
|
2024-12-16 |
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bioconductor-a4preproc
|
public |
Automated Affymetrix Array Analysis Preprocessing Package
|
2024-12-16 |
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bioconductor-lapmix
|
public |
Laplace Mixture Model in Microarray Experiments
|
2024-12-16 |
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bioconductor-rbsurv
|
public |
Robust likelihood-based survival modeling with microarray data
|
2024-12-16 |
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r-classdiscovery
|
public |
Defines the classes used for "class discovery" problems in the OOMPA project (<http://oompa.r-forge.r-project.org/>). Class discovery primarily consists of unsupervised clustering methods with attempts to assess their statistical significance.
|
2024-12-16 |
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bioconductor-hybridmtest
|
public |
Hybrid Multiple Testing
|
2024-12-16 |
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preseq
|
public |
predicting library complexity and genome coverage in high-throughput sequencing
|
2024-12-16 |
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bioconductor-aims
|
public |
AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype
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2024-12-16 |
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ngs-bits
|
public |
Short-read sequencing tools
|
2024-12-16 |
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r-aroma.core
|
public |
Core methods and classes used by higher-level 'aroma.*' packages part of the Aroma Project, e.g. 'aroma.affymetrix' and 'aroma.cn'.
|
2024-12-16 |
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bioconductor-ihw
|
public |
Independent Hypothesis Weighting
|
2024-12-16 |
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bpp-phyl
|
public |
Bio++ is a set of C++ libraries for Bioinformatics.
|
2024-12-16 |
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cutadapt
|
public |
Trim adapters from high-throughput sequencing reads
|
2024-12-16 |
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bioconductor-interactivedisplaybase
|
public |
Base package for enabling powerful shiny web displays of Bioconductor objects
|
2024-12-16 |
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bpp-popgen
|
public |
Bio++ is a set of C++ libraries for Bioinformatics.
|
2024-12-16 |
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perl-sanger-cgp-vagrent
|
public |
A toolset for comparing genomic variants to reference genome annotation to identify potential biological consequences.
|
2024-12-16 |
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gmap
|
public |
Genomic mapping and alignment program for mRNA and EST sequences.
|
2024-12-16 |
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biobambam
|
public |
Tools for early stage alignment file processing.
|
2024-12-16 |
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bioconductor-rpx
|
public |
R Interface to the ProteomeXchange Repository
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2024-12-16 |
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dbg2olc
|
public |
Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies
|
2024-12-16 |
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snvphyl-tools
|
public |
The SNVPhyl (Single Nucleotide Variant PHYLogenomics) pipeline is a pipeline for identifying
Single Nucleotide Variants (SNV) within a collection of microbial genomes and constructing a phylogenetic tree
|
2024-12-16 |
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addrg
|
public |
No Summary
|
2024-12-16 |
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discosnp
|
public |
reference-free small variant caller for short read sequencing data
|
2024-12-16 |
