| Package Name | Access | Summary | Updated |
|---|---|---|---|
| bioconductor-survcomp | public | Performance Assessment and Comparison for Survival Analysis | 2025-08-12 |
| phylip | public | Package of programs for inferring phylogenies | 2025-08-12 |
| gustaf | public | Gustaf is a tool primarily designed for multi-split mapping of sequencing reads. | 2025-08-12 |
| kraken-ea | public | Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. This is a modified version allowing for splitting of fastq files based on read classifications. | 2025-08-11 |
| perl-test-script | public | Basic cross-platform tests for scripts | 2025-08-11 |
| blast | public | BLAST+ is a new suite of BLAST tools that utilizes the NCBI C++ Toolkit. | 2025-08-11 |
| stringtie | public | StringTie employs efficient algorithms for transcript structure recovery and abundance estimation from bulk RNA-Seq reads aligned to a reference genome. | 2025-08-11 |
| spectral_hk | public | No Summary | 2025-08-11 |
| seqan_tcoffee | public | SeqAn::T-Coffee - Multiple Sequence Alignment | 2025-08-11 |
| karect | public | Read error correction tool based on multiple alignment. | 2025-08-10 |
| svmlight | public | SVMLight Library by Thorsten Joachim | 2025-08-10 |
| kronik | public | No Summary | 2025-08-10 |
| megahit | public | MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph | 2025-08-10 |
| pybigwig | public | A python extension written in C for quick access to bigWig files. | 2025-08-10 |
| biofluff | public | Exploratory analysis and visualization of high-throughput sequencing data | 2025-08-10 |
| ir | public | Program for Calculating the Repetitiveness of DNA Sequences | 2025-08-10 |
| sts-smctc | public | A C++ template class library for the efficient and convenient implementation of very general Sequential Monte Carlo algorithms. | 2025-08-10 |
| kallisto | public | Quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. | 2025-08-10 |
| ucsc-paratestjob | public | Version 12.18. | 2025-08-10 |
| bwameth | public | A fast and accurate aligner of BS-seq reads. | 2025-08-09 |
| perl-specio | public | Type constraints and coercions for Perl | 2025-08-09 |
| sourmash | public | Quickly search, compare, and analyze genomic and metagenomic data sets. | 2025-08-07 |
| gotohscan | public | A search tool that finds shorter sequences (usually genes) in large database sequences (chromosomes, genomes, ..) by computing all semi-global alignments. | 2025-08-07 |
| bismark | public | Bismark is a program to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step. The output can be easily imported into a genome viewer, such as SeqMonk, and enables a researcher to analyse the methylation levels of their samples straight away. | 2025-08-06 |
| razers3 | public | RazerS 3 - Faster, fully sensitive read mapping | 2025-08-05 |
