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bismark
|
public |
Bismark is a program to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step. The output can be easily imported into a genome viewer, such as SeqMonk, and enables a researcher to analyse the methylation levels of their samples straight away.
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2025-08-06 |
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razers3
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public |
RazerS 3 - Faster, fully sensitive read mapping
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2025-08-05 |
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rseg
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public |
The RSEG software package is used to analyze ChIP-Seq data, especially for identifying genomic regions and their boundaries marked by diffusive histone modification markers, such as H3K36me3 and H3K27me3.
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2025-08-05 |
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fastani
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public |
FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI).
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2025-08-05 |
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mash
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public |
Fast sequence distance estimator that uses MinHash
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2025-08-05 |
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mason
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public |
Mason is a collection of tools for the simulation of biological sequences.
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2025-08-05 |
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yara
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public |
Yara is an exact tool for aligning DNA sequencing reads to reference genomes.
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2025-08-05 |
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dinopy
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public |
DNA input and output library for Python and Cython. Includes reader and writer for FASTA and FASTQ files, support for samtools faidx files, and generators for solid and gapped q-grams (k-mers).
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2025-08-05 |
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libmems
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public |
libMems is a freely available software development library to support DNA string matching and comparative genomics.
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2025-08-05 |
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bedops
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public |
High-performance genomic feature operations.
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2025-08-05 |
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libmuscle
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public |
libMuscle header files.
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2025-08-05 |
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pplacer
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public |
Pplacer places query sequences on a fixed reference phylogenetic tree to maximize phylogenetic likelihood or posterior probability according to a reference alignment.
|
2025-08-05 |
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libgenome
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public |
A C++ development library designed to make common operations on DNA and protein sequences easy. libGenome provides functionality to read, write, and manipulate sequence and annotation data in several file formats.
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2025-08-05 |
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gocr
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public |
GOCR is an OCR (Optical Character Recognition) program.
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2025-08-04 |
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sentieon
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public |
Accelerated performance bioinformatics tools for mapping and variant calling
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2025-08-04 |
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tracy
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public |
Basecalling, alignment, assembly and deconvolution of Sanger chromatogram trace files
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2025-08-04 |
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rscape
|
public |
R-scape (RNA Structural Covariation Above Phylogenetic Expectation) looks for evidence of a conserved RNA secondary structure by measuring pairwise covariations observed in an input multiple sequence alignment.
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2025-08-04 |
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sickle-trim
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public |
Windowed Adaptive Trimming for fastq files using quality
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2025-08-04 |
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unicycler
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public |
Hybrid assembly pipeline for bacterial genomes
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2025-08-04 |
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yacrd
|
public |
Yet Another Chimeric Read Detector, with long-read mapper result as input.
|
2025-08-04 |
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perl-text-balanced
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public |
Extract delimited text sequences from strings.
|
2025-08-04 |
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prophyle
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public |
ProPhyle is an accurate, resource-frugal and deterministic phylogeny-based metagenomic classifier.
|
2025-08-04 |
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perl-bio-samtools
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public |
Read SAM/BAM files
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2025-08-01 |
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enabrowsertools
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public |
enaBrowserTools is a set of scripts that interface with the ENA web services to download data from ENA easily.
|
2025-08-01 |
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perl-html-tidy
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public |
(X)HTML validation in a Perl object
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2025-08-01 |
