| Package Name | Access | Summary | Updated |
|---|---|---|---|
| lovis4u | public | Loci Visualisation Tool. | 2025-05-14 |
| r-ldweaver | public | Perform genomewide epistasis analysis by evaluating the LD structure in bacteria. | 2025-05-14 |
| dmox | public | Rust-based demultiplexing of haplotagging linked-read data. | 2025-05-14 |
| genotypy | public | Automatically detect genomic barcodes integrated into loci of interest from sequencing data | 2025-05-14 |
| quantms-utils | public | Python package with scripts and helpers for the quantms workflow. | 2025-05-14 |
| pypints | public | Peak Identifier for Nascent Transcripts Starts (PINTS) | 2025-05-14 |
| sdrf-pipelines | public | Translate, convert SDRF to configuration pipelines | 2025-05-14 |
| seq2science | public | Automated preprocessing of Next-Generation-Sequencing data. | 2025-05-14 |
| picrust2 | public | PICRUSt: Phylogenetic Investigation of Communities by Reconstruction of Unobserved States | 2025-05-14 |
| fido | public | No Summary | 2025-05-13 |
| biophi | public | BioPhi open-source antibody design platform. | 2025-05-13 |
| genomepy | public | Install and use genomes & gene annotations the easy way! | 2025-05-13 |
| bwa | public | The BWA read mapper. | 2025-05-13 |
| unifrac | public | Fast phylogenetic diversity calculations. | 2025-05-13 |
| rad | public | Read-structure Agnostic Demultiplexer for long-read single-cell RNA-seq. | 2025-05-13 |
| starfish | public | Standardized analysis pipeline for image-based transcriptomics. | 2025-05-13 |
| nwkit | public | Tools for processing newick trees | 2025-05-13 |
| iow | public | Implementation of Balanced Parentheses | 2025-05-13 |
| isotools | public | Framework for the analysis of long read transcriptome sequencing data. | 2025-05-12 |
| tomm40_wgs | public | TOMM40_WGS: Genotyping TOMM40’523 Poly-T Polymorphisms Using Whole-Genome Sequencing. | 2025-05-12 |
| svdss | public | Structural Variant Discovery from Sample-specific Strings. | 2025-05-12 |
| singlem | public | At heart, SingleM is a tool for profiling shotgun metagenomes. It was originally designed to determine the relative abundance of bacterial and archaeal taxa in a sample. As of version 0.19.0, it can also be used to profile dsDNA phages (see Lyrebird). It shows good accuracy in estimating the relative abundances of community members, and has a particular strength in dealing with novel lineages. The method it uses also makes it suitable for some related tasks, such as assessing eukaryotic contamination, finding bias in genome recovery, and lineage-targeted MAG recovery. It can also be used as the basis for choosing metagenomes which, when coassembled, maximise the recovery of novel MAGs (see Bin Chicken). | 2025-05-12 |
| r-viber | public | Variational Binomial Mixtures. | 2025-05-12 |
| genedom | public | Genetic part standardization. | 2025-05-12 |
| cpat | public | Coding Potential Assessment Tool | 2025-05-12 |
