| Package Name | Access | Summary | Updated |
|---|---|---|---|
| marbel | public | Marbel generates realistic in silico metatranscriptomic dataset based on specified parameters. | 2025-06-06 |
| emboss | public | The European Molecular Biology Open Software Suite | 2025-06-06 |
| bcalm | public | BCALM 2 is a bioinformatics tool for constructing the compacted de Bruijn graph from sequencing data. | 2025-06-06 |
| gfatools | public | Tools for manipulating sequence graphs in the GFA and rGFA formats. | 2025-06-06 |
| flexidot | public | Flexible dotplotting of genomic sequences. | 2025-06-06 |
| bcftools-gtc2vcf-plugin | public | Tools to convert Illumina and Affymetrix array intensity data files into VCF files. | 2025-06-06 |
| hmftools-bwa-plus | public | bwa-mem with extensions for WiGiTS | 2025-06-06 |
| amalgkit | public | Tools for transcriptome amalgamation | 2025-06-06 |
| phylogenize | public | Phylogenize is a tool that allows users to link microbial genes to environments, accounting for phylogeny. | 2025-06-06 |
| uchime | public | UCHIME2 is an algorithm for detecting chimeric sequences. | 2025-06-06 |
| moabs | public | Methylation analysis on Bisulfite-Sequencing reads | 2025-06-05 |
| phynteny_transformer | public | Phynteny: Synteny-based prediction of bacteriophage genes. | 2025-06-05 |
| perl-file-find-rule | public | Alternative interface to File::Find. | 2025-06-05 |
| hicberg | public | Statistical profiling based tool for contact data (Hi-C, ChIA-PET, Capture-C, etc.) and genomics data reconstruction | 2025-06-05 |
| pacini_typing | public | YAML-based bacterial genotyping application | 2025-06-05 |
| virulencefinder | public | VirulenceFinder identifies virulence genes in total or partial sequenced isolates of bacteria | 2025-06-05 |
| pasta | public | An implementation of the PASTA (Practical Alignment using Sate and TrAnsitivity) algorithm. | 2025-06-05 |
| giatools | public | Tools required for Galaxy Image Analysis | 2025-06-05 |
| metaphlan | public | Metagenomic Phylogenetic Analysis. | 2025-06-04 |
| pretextsnapshot | public | Commandline image generator for Pretext Hi-C genome contact maps. | 2025-06-04 |
| bowtie2 | public | A fast and sensitive gapped read aligner. | 2025-06-03 |
| r-tmae | public | Tests and visualizations for mono-allelicly expressed variants. | 2025-06-03 |
| bcftools-liftover-plugin | public | Tools to work with GWAS-VCF summary statistics files (liftover plugin only) | 2025-06-03 |
| k8 | public | Lightweight JavaScript shell based on Google's V8 JavaScript engine | 2025-06-03 |
| quota_anchor | public | Strand and WGD aware syntenic gene identification | 2025-06-03 |
