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hifi_trimmer
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public |
hifi_trimmer is a tool for filtering and trimming extraneous adapter hits from a HiFi read set using a BLAST search.
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2025-07-09 |
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stripepy-hic
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public |
StripePy recognizes architectural stripes in 3C and Hi-C contact maps using geometric reasoning
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2025-07-09 |
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busco
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public |
Assessment of assembly completeness using Universal Single Copy Orthologs.
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2025-07-09 |
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barcode-validator
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public |
A python package for structural and taxonomic validation of DNA barcode data
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2025-07-09 |
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pia
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public |
PIA is a toolbox for MS based protein inference and identification analysis.
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2025-07-09 |
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cerberus-x
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public |
Versatile Functional Ontology Assignments via Hidden Markov Model (HMM) searching with environmental focus of shotgun 'omics data.
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2025-07-09 |
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perl-io-zlib
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public |
IO:: style interface to Compress::Zlib
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2025-07-09 |
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yame
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public |
YAME: Yet Another Methylation Extractor.
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2025-07-09 |
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bamdam
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public |
A post-mapping, post-least-common-ancestor toolkit for ancient DNA analysis.
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2025-07-09 |
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iqtree
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public |
Efficient phylogenomic software by maximum likelihood.
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2025-07-09 |
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admixtools
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public |
ADMIXTOOLS (Patterson et al. 2012) is a software package that supports formal tests of whether admixture occurred, and makes it possible to infer admixture proportions and dates.
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2025-07-09 |
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ngmlr
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public |
ngmlr is a long-read mapper designed to align PacBio or Oxford Nanopore reads to a reference genome and optimized for structural variation detection
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2025-07-08 |
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kraken2
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public |
Kraken2 is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies.
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2025-07-08 |
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n50
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public |
A command-line tool to calculate the N50 value of a set of sequences and other utilities.
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2025-07-08 |
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sniffles
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public |
Sniffles is a structural variation caller using third generation sequencing (PacBio or Oxford Nanopore).
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2025-07-08 |
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hifiasm_meta
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public |
Metagenome assembler for Hifi reads, based on hifiasm.
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2025-07-08 |
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fusioncatcher
|
public |
Finder of Somatic Fusion Genes in RNA-seq data.
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2025-07-08 |
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pyslow5
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public |
slow5lib Python binding
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2025-07-08 |
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lrge
|
public |
Genome size estimation from long read overlaps
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2025-07-08 |
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duphist
|
public |
DupHIST: A toolkit for duplication history inference via substitution-based timeframe
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2025-07-08 |
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nf-core
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public |
Python package with helper tools for the nf-core community.
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2025-07-08 |
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snap
|
public |
Semi-HMM-based Nucleic Acid Parser - a gene prediction tool.
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2025-07-08 |
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fusioncatcher-seqtk
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public |
This is modified Seqtk version required for FusionCatcher.
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2025-07-08 |
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mantis-msi2
|
public |
MANTIS2 is a program developed for detecting microsatellite instability from paired-end BAM files
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2025-07-08 |
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zerone
|
public |
Zerone discretizes several ChIP-seq replicates simultaneously and resolves conflicts between them.
|
2025-07-08 |
