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sspace_basic
|
public |
Scaffolding Pre-Assemblies After Contig Extension (SSPACE)
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2025-07-31 |
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ms2rescore
|
public |
Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
|
2025-07-31 |
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haplogrep3
|
public |
A tool for mtDNA haplogroup classification.
|
2025-07-31 |
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phables
|
public |
Phables: from fragmented assemblies to high-quality bacteriophage genomes
|
2025-07-31 |
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eggnog-mapper
|
public |
Fast genome-wide functional annotation through orthology assignment.
|
2025-07-31 |
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liana
|
public |
LIANA+: a one-stop-shop framework for cell-cell communication
|
2025-07-31 |
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r-circrnafull
|
public |
An R package for reconstruction of full length circRNA sequence using chimeric alignment information
|
2025-07-31 |
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muscle
|
public |
Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences
|
2025-07-31 |
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bx-python
|
public |
Tools for manipulating biological data, particularly multiple sequence alignments.
|
2025-07-31 |
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kmer-db
|
public |
Kmer-db is a fast and memory-efficient tool for estimating evolutionary distances.
|
2025-07-30 |
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agc
|
public |
Assembled Genomes Compressor (AGC) is a tool designed to compress collections of de-novo assembled genomes. It can be used for various types of datasets: short genomes (viruses) as well as long (humans).
|
2025-07-30 |
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reseek
|
public |
Protein structure alignment and search algorithm.
|
2025-07-30 |
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racon
|
public |
Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads.
|
2025-07-30 |
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khipu-metabolomics
|
public |
Python library for generalized, low-level annotation of MS metabolomics.
|
2025-07-30 |
|
rust-gtars
|
public |
Performance-critical tools to manipulate, analyze, and process genomic interval data.
|
2025-07-30 |
|
fishplotpy
|
public |
A Python implementation for visualizing clonal evolution dynamics using fish plots
|
2025-07-30 |
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tmb
|
public |
This tool was designed to calculate a Tumor Mutational Burden (TMB) score from a VCF file.
|
2025-07-30 |
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delly
|
public |
Structural variant discovery by integrated paired-end and split-read analysis.
|
2025-07-30 |
|
influx-si-data-manager
|
public |
Data manager for handling influx_si inputs on Workflow4Metabolomics (usegalaxy.org)
|
2025-07-30 |
|
eukrep
|
public |
Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets
|
2025-07-30 |
|
snakemake-executor-plugin-cluster-sync
|
public |
A Snakemake executor plugin for cluster jobs that are executed synchronously.
|
2025-07-30 |
|
epicore
|
public |
Compute core epitopes from multiple overlapping peptides.
|
2025-07-30 |
|
svpg
|
public |
Pangenome-based structural variation caller
|
2025-07-30 |
|
foldcomp
|
public |
Foldcomp: a library and format for compressing and indexing large protein structure sets
|
2025-07-30 |
|
smakcr
|
public |
Count short k-mers fast
|
2025-07-30 |
