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upload-test-d8cf4dea
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public |
No Summary
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2023-06-16 |
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r-genemodel
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public |
Using simple input, this package creates plots of gene models. Users can create plots of alternatively spliced gene variants and the positions of mutations and other gene features.
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2023-06-16 |
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upload-test-a02c8a69
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public |
No Summary
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2023-06-16 |
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ismapper
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public |
A mapping-based tool for identification of the site and orientation of IS insertions in bacterial genomes.
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2023-06-16 |
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eval
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public |
Eval is a flexible tool for analyzing the performance of gene-structure prediction programs.
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2023-06-16 |
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pybda
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public |
Big biological data analytics powered by Apache Spark
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2023-06-16 |
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perl-logger-simple
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public |
Implementation of the Simran-Log-Log and Simran-Error-Error modules
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2023-06-16 |
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irida-uploader
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public |
Upload NGS data to IRIDA system
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2023-06-16 |
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upload-test-aa405bfb
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public |
No Summary
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2023-06-16 |
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upload-test-efc13a70
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public |
No Summary
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2023-06-16 |
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pepgenome
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public |
A java tool to map peptide and peptidoform evideces to ENSEMBL Genome Coordinates
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2023-06-16 |
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upload-test-b3b3b66b
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public |
No Summary
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2023-06-16 |
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gapfiller
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public |
GapFiller is a seed-and-extend local assembler to fill the gap within paired reads.
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2023-06-16 |
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taxsbp
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public |
TaxSBP: taxonomic structured bin packing
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2023-06-16 |
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gmcloser
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public |
GMcloser fills and closes the gaps present in scaffold assemblies, especially those generated by the de novo assembly of whole genomes with next-generation sequencing (NGS) reads.
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2023-06-16 |
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phylovega
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public |
Interactive Phylogenetic trees in Vega.
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2023-06-16 |
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recalladapters
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public |
recalladapters - A tool to recall adapters for PacBio data
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2023-06-16 |
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phylogenetics
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public |
Python API for managing a phylogenetics projects.
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2023-06-16 |
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pyasr
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public |
Ancestral sequence reconstruction using Python.
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2023-06-16 |
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unitig-counter
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public |
Uses a compressed de Bruijn graph (implemented in GATB) to count unitigs in bacterial populations.
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2023-06-16 |
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crispr_studio
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public |
CRISPRStudio is a program developed to facilitate and accelerate CRISPR array visualization
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2023-06-16 |
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micropita
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public |
microPITA is a computational tool enabling sample selection in two-stage (tiered) studies.
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2023-06-16 |
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transposcope
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public |
A package for visualizing read coverage in areas flanking mobile element insertions.
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2023-06-16 |
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athena_meta
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public |
Athena read cloud assembler for metagenomes
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2023-06-16 |
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biobb_structure_manager
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public |
BioBB_structure_manager is a library to efficiently load and process biomolecular 3D structures.
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2023-06-16 |
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groopm
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public |
Metagenomic binning suite
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2023-06-16 |
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maskrc-svg
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public |
Masks recombinant regions in an alignment based on ClonalFrameML or Gubbins output Option to draw SVG of recombinant regions.
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2023-06-16 |
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gvcf2bed
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public |
Convert gVCF into BED
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2023-06-16 |
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cactus
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public |
Cactus is a reference-free whole-genome multiple alignment program based upon notion of Cactus graphs
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2023-06-16 |
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bioconductor-rchyoptimyx
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public |
Optimyzed Cellular Hierarchies for Flow Cytometry
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2023-06-16 |
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bioconductor-flowtype
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public |
Phenotyping Flow Cytometry Assays
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2023-06-16 |
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bioconductor-ampliqueso
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public |
The package provides tools and reports for the analysis of amplicon sequencing panels, such as AmpliSeq
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2023-06-16 |
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r-disco
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public |
Concordance and discordance of homologous gene regulation allows comparing reaction to stimuli in different organisms, for example human patients and animal models of a disease. The package contains functions to calculate discordance and concordance score for homologous gene pairs, identify concordantly or discordantly regulated transcriptional modules and visualize the results. It is intended for analysis of transcriptional data.
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2023-06-16 |
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halla
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public |
HAllA: Hierarchically All-against-All Association Testing.
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2023-06-16 |
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scater-scripts
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public |
A set of wrappers for individual components of the Scater package. Functions R packages are hard to call when building workflows outside of R, so this package adds a set of simple wrappers with robust argument parsing. Intermediate steps are currently mainly serialized R objects, but the ultimate objective is to have language-agnostic intermediate formats allowing composite workflows using a variety of software packages.
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2023-06-16 |
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upload-test-beaba7fc
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public |
No Summary
|
2023-06-16 |
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upload-test-28bd3c91
|
public |
No Summary
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2023-06-16 |
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oncotator
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public |
Oncotator is a tool for annotating human genomic point mutations and indels with data relevant to cancer researchers.
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2023-06-16 |
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ncbi-util-legacy
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public |
NCBI software development toolkit
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2023-06-16 |
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biobb_wf_mutations
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public |
Lysozyme plus Mutations workflow built using BioBB Based on the official Gromacs tutorial: http://www.mdtutorials.com/gmx/lysozyme/01_pdb2gmx.html
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2023-06-16 |
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mantis
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public |
Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index
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2023-06-16 |
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upload-test-be30d0e6
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public |
No Summary
|
2023-06-16 |
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upload-test-5caf8961
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public |
No Summary
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2023-06-16 |
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biobb_adapters
|
public |
Biobb_adapters is the Biobb module collection to use the building blocks with several workflow managers.
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2023-06-16 |
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jobtree
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public |
Python based pipeline management software for clusters that makes running recursive and dynamically scheduled computations straightforward
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2023-06-16 |
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upload-test-17ab412e
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public |
No Summary
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2023-06-16 |
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bigsi
|
public |
BItsliced Genomic Signature Index [BIGSI]
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2023-06-16 |
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spotyping3
|
public |
SpoTyping3: fast and accurate in silico Mycobacterium spoligotyping from sequence reads, compatible with Python3
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2023-06-16 |
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mirfix
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public |
MIRfix automatically curates miRNA datasets by improving alignments of their precursors, the consistency of the annotation of mature miR and miR* sequence, and the phylogenetic coverage. MIRfix produces alignments that are comparable across families and sets the stage for improved homology search as well as quantitative analyses.
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2023-06-16 |
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rawtools
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public |
RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control analysis of Thermo Orbitrap raw mass spectrometer files.
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2023-06-16 |
