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arcsv
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public |
A pipeline to detect SV in archaic human
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2023-08-17 |
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metamobilepicker
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public |
MetaMobilePicker: identification of MGEs and ARGs based in metagenomic samples
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2023-08-17 |
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qiskit-xyz2pdb
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public |
qiskit-xyz2pdb
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2023-08-15 |
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prscs
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public |
PRS-CS is a Python based command line tool that infers posterior SNP effect sizes under continuous shrinkage (CS) priors using GWAS summary statistics and an external LD reference panel.
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2023-08-11 |
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bactopia-gather
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public |
The methods used in Bactopia to gather all samples into one place
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2023-08-11 |
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graphmb
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public |
GraphMB is a Metagenomic Binner developed for long-read assemblies, that takes advantage of graph machine learning algorithms and the assembly graph generated during assembly.
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2023-08-11 |
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tb_variant_filter
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public |
VCF variant filter optimised for filter M. tuberculosis H37Rv variants
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2023-08-10 |
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platon
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public |
Plasmid contig classification and characterization for short read draft assemblies.
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2023-08-10 |
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vcf2maf-umccr
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public |
Convert a VCF into a MAF where each variant is annotated to only one of all possible gene isoforms
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2023-08-10 |
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gfflu
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public |
Annotate Influenza A virus gene segment sequences and output GFF3 files.
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2023-08-10 |
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beacon2-ri-tools
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public |
Script to parse a VCF having SnepEff/SnpSift annotations
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2023-08-09 |
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scepia
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public |
Single Cell Epigenome-based Inference of Activity
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2023-08-09 |
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perl-minion-backend-sqlite
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public |
SQLite backend for Minion job queue
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2023-08-09 |
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perl-mojo-pg
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public |
Mojolicious PostgreSQL
|
2023-08-08 |
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perl-mojo-sqlite
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public |
A tiny Mojolicious wrapper for SQLite
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2023-08-08 |
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perl-sql-abstract-pg
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public |
PostgreSQL features for SQL::Abstract
|
2023-08-08 |
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panoptes-ui
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public |
panoptes: monitor computational workflows in real time
|
2023-08-08 |
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perl-sql-abstract
|
public |
Generate SQL from Perl data structures
|
2023-08-07 |
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sra-human-scrubber
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public |
An SRA tool identifies and removes any significant human read, and outputs the edited (cleaned) fastq file for SRA submission.
|
2023-08-07 |
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perl-json-validator
|
public |
Validate data against a JSON schema
|
2023-08-07 |
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bioconductor-scate
|
public |
SCATE: Single-cell ATAC-seq Signal Extraction and Enhancement
|
2023-08-07 |
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perl-uri-nested
|
public |
Nested URIs
|
2023-08-06 |
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perl-module-scandeps
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public |
Recursively scan Perl code for dependencies
|
2023-08-04 |
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pythomics
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public |
A multi-omic python package
|
2023-08-04 |
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ncbi-genome-download
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public |
Download genome files from the NCBI FTP server.
|
2023-08-01 |
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pyeasyfuse
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public |
EasyFuse is a pipeline to detect fusion transcripts from RNA-seq data with high accuracy. The current version of EasyFuse uses two fusion gene detection tools, STAR-Fusion and Fusioncatcher along with a powerful read filtering strategy, stringent re-quantification of supporting reads and machine learning for highly accurate predictions.
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2023-07-31 |
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rgt
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public |
Toolkit to perform regulatory genomics data analysis
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2023-07-31 |
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dnacauldron
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public |
Cloning simulation for DNA assembly (Golden Gate, Gibson...)
|
2023-07-30 |
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crimson
|
public |
Bioinformatics tool outputs converter to JSON or YAML.
|
2023-07-29 |
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make_prg
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public |
A tool to create and update PRGs from a set of Multiple Sequence Alignments.
|
2023-07-27 |
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metaxa
|
public |
Improved Identification and Taxonomic Classification of Small and Large Subunit rRNA in Metagenomic Data.
|
2023-07-25 |
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referee
|
public |
Quality scoring for reference genomes
|
2023-07-24 |
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m6anet
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public |
m6anet is a python package for detection of m6a modifications from Nanopore direct RNA sequencing data.
|
2023-07-24 |
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polystest
|
public |
Interactive tool for statistical testing, data browsing and interactive visualization of quantitative omics data
|
2023-07-23 |
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bioconductor-interactivedisplay
|
public |
Package for enabling powerful shiny web displays of Bioconductor objects
|
2023-07-23 |
|
demultiplex
|
public |
Demultiplex any number of FASTA or a FASTQ files based on a list of barcodes
|
2023-07-21 |
|
galaxy-upload
|
public |
Galaxy Command-Line Upload Utility
|
2023-07-21 |
|
cdhit-reader
|
public |
Parse CD-HIT cluster files
|
2023-07-21 |
|
fastools
|
public |
FASTA/FASTQ analysis and manipulation toolkit.
|
2023-07-20 |
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bioconductor-pdatk
|
public |
Pancreatic Ductal Adenocarcinoma Tool-Kit
|
2023-07-19 |
|
r-dgeclustering
|
public |
DGEclustering is an R package for multidimensional clustering of differential gene expression datasets, and it integrates GO annotations to improve the clustering result.
|
2023-07-19 |
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bioconductor-irisfgm
|
public |
Comprehensive Analysis of Gene Interactivity Networks Based on Single-Cell RNA-Seq
|
2023-07-19 |
|
bioconductor-fcoex
|
public |
FCBF-based Co-Expression Networks for Single Cells
|
2023-07-19 |
|
r-bseqsc
|
public |
Companion package to: A single-cell transcriptomic map of the human and mouse pancreas reveals inter- and intra-cell population structure. Baron et al. Cell Systems (2016) https://www.ncbi.nlm.nih.gov/pubmed/27667365
|
2023-07-19 |
|
bioconductor-mirsm
|
public |
Inferring miRNA sponge modules in heterogeneous data
|
2023-07-19 |
|
bioconductor-nanostringqcpro
|
public |
Quality metrics and data processing methods for NanoString mRNA gene expression data
|
2023-07-19 |
|
bioconductor-singlecellexperiment-scripts
|
public |
A set of wrappers for operations associated with the SingleCellExperiment package. Functions in R packages are hard to call when building workflows outside of R, so this package adds a set of simple wrappers with robust argument parsing. Intermediate steps are currently mainly serialized R objects, but the ultimate objective is to have language-agnostic intermediate formats allowing composite workflows using a variety of software packages.
|
2023-07-18 |
|
bioconductor-chromswitch
|
public |
An R package to detect chromatin state switches from epigenomic data
|
2023-07-18 |
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r-calder2
|
public |
CALDER is a Hi-C analysis tool for the analysis of hierarchical chromatin interactions
|
2023-07-18 |
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bioconductor-benchdamic
|
public |
Benchmark of differential abundance methods on microbiome data
|
2023-07-18 |
