| Package Name | Access | Summary | Updated |
|---|---|---|---|
| ccsmeth | public | Detecting DNA methylation from PacBio CCS read | 2025-04-22 |
| transcriptm | public | Metagenomics analyses. | 2025-04-22 |
| cdhit-reader | public | Parse CD-HIT cluster files | 2025-04-22 |
| fxtract | public | Extract sequences from a fastx file given a subsequence or identifier. | 2025-04-22 |
| physiofit4galaxy | public | Calculate extracellular fluxes from metabolite concentrations and biomass data | 2025-04-22 |
| fiji-max_inscribed_circles | public | ImageJ / Fiji plugin implementing an iterative Largest Inscribed Circle algorithm using a euclidean distance map | 2025-04-22 |
| haplomap | public | Haplotype-based computational genetic mapping. | 2025-04-22 |
| dirseq | public | Work out whether RNAseq reads in general agree with the direction of the gene predicted. | 2025-04-22 |
| gambit | public | Tool for rapid taxonomic identification of microbial pathogens | 2025-04-22 |
| gfa1 | public | gfa1 toolkit | 2025-04-22 |
| r-bulkanalyser | public | Given an expression matrix from a bulk sequencing experiment, pre-processes it and creates a shiny app for interactive data analysis and visualisation. The app contains quality checks, differential expression analysis, volcano and cross plots, enrichment analysis and gene regulatory network inference, and can be customised to contain more panels by the user. | 2025-04-22 |
| rpfbagr | public | Cli interface to predict gene knockout targets with an heterologous pathway | 2025-04-22 |
| strcount | public | A package to count the number of repeats in a Short Tandem Repeat Expansion from long reads. | 2025-04-22 |
| galaxy-upload | public | Galaxy Command-Line Upload Utility | 2025-04-22 |
| taxadb | public | locally query the ncbi taxonomy | 2025-04-22 |
| saintbioutils | public | A package of utility and miscellaneous functions for using in bioinformaticspipelines, primarily in Python. | 2025-04-22 |
| svjedi-graph | public | SVJedi-graph is a structural variation (SV) genotyper for long read data using a variation graph to represent SVs. | 2025-04-22 |
| pyfamsa | public | Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments. | 2025-04-22 |
| plastedma | public | Plastic Enzymes Degrading in Metagenomic databases Analysis | 2025-04-22 |
| r-abdiv | public | Alpha and Beta Diversity Measures | 2025-04-22 |
| metacoag | public | MetaCoAG: Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs | 2025-04-22 |
| pbptyper | public | In silico Penicillin Binding Protein (PBP) typer for Streptococcus pneumoniae assemblies | 2025-04-22 |
| neofox | public | Annotation of mutated peptide sequences (mps) with published or novel potential neo-epitope descriptors | 2025-04-22 |
| r-netcomi | public | Network Construction and Comparison for Microbiome Data | 2025-04-22 |
| r-mixedcca | public | Semi-parametric approach for sparse canonical correlation analysis | 2025-04-22 |
