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condiga
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public |
ConDiGA: Contigs Directed Gene Annotation for accurate protein sequence database construction in metaproteomics
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2024-03-25 |
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dimet
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public |
A tool for Differential Isotope-labeled targeted Metabolomics
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2024-03-25 |
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dram
|
public |
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
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2024-03-25 |
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bactopia-assembler
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public |
The assembly process used by Bactopia.
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2024-03-25 |
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taxor
|
public |
Fast and space-efficient taxonomic classification of long reads
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2024-03-24 |
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rgi
|
public |
This tool provides a preliminary annotation of your DNA sequence(s) based upon the data available in The Comprehensive Antibiotic Resistance Database (CARD). Hits to genes tagged with Antibiotic Resistance ontology terms will be highlighted. As CARD expands to include more pathogens, genomes, plasmids, and ontology terms this tool will grow increasingly powerful in providing first-pass detection of antibiotic resistance associated genes. See license at CARD website
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2024-03-24 |
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reviewer
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public |
A tool for visualizing alignments of reads in regions containing tandem repeats
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2024-03-23 |
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ltr_finder_parallel
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public |
Perl wrapper to parallelize ltr_finder
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2024-03-21 |
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ltr_harvest_parallel
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public |
Perl wrapper for parallel execution of LTR_harvest
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2024-03-21 |
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baredsc
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public |
baredSC (Bayesian Approach to Retreive Expression Distribution of Single Cell) is a tool that uses a Monte-Carlo Markov Chain to estimate a confidence interval on the probability density function (PDF) of expression of one or two genes from single-cell RNA-seq data.
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2024-03-21 |
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mugsy
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public |
Mugsy is a multiple whole genome aligner.
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2024-03-21 |
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pymlst
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public |
python Mlst Local Search Tool
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2024-03-20 |
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skyline2isocor
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public |
Convert skyline output to IsoCor input format
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2024-03-20 |
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diffacto
|
public |
A protein summarization method for shotgun proteomics experiments
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2024-03-19 |
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r-azimuth
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public |
Azimuth is a Shiny app demonstrating a query-reference mapping algorithm for single-cell data.
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2024-03-18 |
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rnachipintegrator
|
public |
Analyse genes against peak data, and vice versa
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2024-03-18 |
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compleasm
|
public |
Compleasm: a faster and more accurate reimplementation of BUSCO
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2024-03-18 |
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scsplit
|
public |
Genotype-free demultiplexing of pooled single-cell RNA-Seq
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2024-03-18 |
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demuxem
|
public |
DemuxEM is the demultiplexing module of Pegasus, which works on cell-hashing and nucleus-hashing genomics data.
|
2024-03-17 |
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bactopia-variants
|
public |
Methods used by Bactopia for SNP and InDel analysis
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2024-03-15 |
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lamassemble
|
public |
Merge overlapping "long" DNA reads into a consensus sequence
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2024-03-15 |
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ostir
|
public |
Open Source Transcription Initiation Rates
|
2024-03-14 |
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biocamlib
|
public |
An OCaml foundation upon which a number of the bioinformatics tools are built.
|
2024-03-14 |
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msmetaenhancer
|
public |
MSMetaEnhancer is a Python tool that adds more annotations (e.g. SMILES, InChI, CAS number) to MSP files.
|
2024-03-14 |
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campygstyper
|
public |
Accurate assignment of ANI genomic species to Campylobacter genomes.
|
2024-03-14 |
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orthoflow
|
public |
Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.
|
2024-03-14 |
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segmetrics
|
public |
A Python package implementing image segmentation and object detection performance measures, for biomedical image analysis and beyond.
|
2024-03-14 |
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mafft
|
public |
Multiple alignment program for amino acid or nucleotide sequences based on fast Fourier transform
|
2024-03-14 |
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vireosnp
|
public |
vireoSNP - donor deconvolution for multiplexed scRNA-seq data
|
2024-03-14 |
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metamaps
|
public |
MetaMaps is a tool for long-read metagenomic analysis
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2024-03-14 |
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treesap
|
public |
TreeSAP: Tree SAmpling under Phylogenetic models
|
2024-03-13 |
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fastq
|
public |
A simple FASTQ toolbox for small to medium size projects without dependencies.
|
2024-03-13 |
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blosum
|
public |
A small module for easy access to BLOSUM matrices without dependencies.
|
2024-03-12 |
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snakemake-executor-plugin-cluster-sync
|
public |
A Snakemake executor plugin for cluster jobs that are executed synchronously.
|
2024-03-12 |
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plannotate
|
public |
Webserver and command line tool for annotating engineered plasmids
|
2024-03-12 |
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snakemake-executor-plugin-lsf-jobstep
|
public |
A Snakemake executor plugin for running bjobs jobs inside of LSF jobs (meant for internal use by snakemake-executor-plugin-lsf)
|
2024-03-12 |
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orientationpy
|
public |
OrientationPy is the pythonic successor to the well-loved OrientationJ Fiji Plugin. It is a library that takes in 2D images or 3D volumes and computes the orientation of the greylevels.
|
2024-03-12 |
|
viralmsa
|
public |
Reference-guided multiple sequence alignment of viral genomes
|
2024-03-12 |
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snakemake-executor-plugin-cluster-generic
|
public |
Generic cluster executor for Snakemake
|
2024-03-11 |
|
virstrain
|
public |
An RNA/DNA virus strain-level identification tool for short reads.
|
2024-03-10 |
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merge-gbk-records
|
public |
Turn multiple GenBank records (either in multiple files or a single multi-record file) into a single record
|
2024-03-10 |
|
cutefc
|
public |
Regenotyping structural variants through an accurate and efficient force-calling method
|
2024-03-10 |
|
rdp_classifier
|
public |
Naive Bayesian classifier that can rapidly and accurately provide taxonomic assignments from domain to genus
|
2024-03-09 |
|
plassembler
|
public |
Quickly and accurately assemble plasmids in hybrid sequenced bacterial isolates
|
2024-03-08 |
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cellsnake
|
public |
cellsnake, a user-friendly tool for single cell RNA sequencing analysis
|
2024-03-08 |
|
mg-toolkit
|
public |
Metagenomics toolkit.
|
2024-03-07 |
|
semibin
|
public |
Metagenomic binning with semi-supervised siamese neural networks
|
2024-03-07 |
|
ribotools
|
public |
Ribo-seq analysis tools associated with the Rp-Bp package and more
|
2024-03-06 |
|
phylophlan
|
public |
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
|
2024-03-06 |
|
dosage_score
|
public |
Dosage-score: pipline to estimate dosage of each genomic region
|
2024-03-06 |
