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assembly_finder
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public |
Snakemake-powered cli pipeline to download genomes with NCBI datasets
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2024-10-24 |
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genmod
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public |
Annotate genetic inheritance models in variant files
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2024-10-24 |
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steamboat
|
public |
A collection of tools/scripts for microbial bioinformatics
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2024-10-24 |
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mikrokondo-tools
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public |
A collection of utilities to make using the mikrokondo pipeline easier
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2024-10-23 |
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pggb
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public |
PanGenome Graph Building pipeline renders
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2024-10-23 |
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mkdesigner
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public |
Genome-wide design of markers for PCR-based genotyping from NGS data.
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2024-10-23 |
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macsyfinder
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public |
MacSyFinder: Detection of macromolecular systems in protein datasets using systems modelling and similarity search
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2024-10-23 |
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snakedeploy
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public |
Helper for deploying published Snakemake pipelines.
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2024-10-23 |
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pykofamsearch
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public |
Fast implementation of HMMSEARCH optimized for high-memory systems using PyHmmer.
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2024-10-22 |
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clinvar-this
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public |
ClinVar Submission API Made Easy.
|
2024-10-22 |
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r-saccharis
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public |
A rendering package for creating phylogenetic trees from SACCHARIS .json and .tree files, in the R statistical computing language.
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2024-10-22 |
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mofapy2
|
public |
Multi-Omics Factor Analysis
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2024-10-22 |
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trim-galore
|
public |
Trim Galore! is a wrapper script to automate quality and adapter trimming as well as quality control
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2024-10-22 |
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hificnv
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public |
Copy number variant caller and depth visualization utility for PacBio HiFi reads
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2024-10-22 |
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telosearchlr
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public |
TeloSearchLR (telomere search using long sequencing reads) is a Python script for aiding the identificaiton of telomeric repeat motifs.
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2024-10-22 |
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hictk
|
public |
Blazing fast toolkit to work with .hic and .cool files
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2024-10-22 |
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scoring-matrices
|
public |
Dependency free, Cython-compatible scoring matrices to use with biological sequences.
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2024-10-22 |
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rosella
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public |
Metagenomic binning pipeline and algorithm using UMAP and HDBSCAN
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2024-10-22 |
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perl-excel-writer-xlsx
|
public |
Create a new file in the Excel 2007+ XLSX format.
|
2024-10-22 |
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cosigt
|
public |
Cosigt (COsine SImilarity-based GenoTyper)
|
2024-10-21 |
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pyhmmsearch
|
public |
Fast implementation of HMMSEARCH optimized for high-memory systems using PyHmmer.
|
2024-10-21 |
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metagenome-atlas
|
public |
ATLAS - Three commands to start analysing your metagenome data
|
2024-10-21 |
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irma
|
public |
IRMA: Iterative Refinement Meta-Assembler for the robust assembly, variant calling, and phasing of highly variable RNA viruses.
|
2024-10-21 |
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splash
|
public |
Unsupervised and reference-free unifying framework to discover regulated sequence variation through statistical analysis of k-mer composition in both DNA and RNA sequence.
|
2024-10-21 |
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biobb_cp2k
|
public |
Biobb_cp2k is a BioBB category for CP2K QM package.
|
2024-10-21 |
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ezcharts
|
public |
eCharts plotting API.
|
2024-10-21 |
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kb-python
|
public |
A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing.
|
2024-10-21 |
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fastq-dl
|
public |
A tool to download FASTQs associated with Study, Experiment, or Run accessions.
|
2024-10-21 |
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sdeper
|
public |
Spatial Deconvolution method with Platform Effect Removal
|
2024-10-20 |
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taxmyphage
|
public |
Script to assign taxonomy to a bacteriophage at the genus and species level
|
2024-10-20 |
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gene-trajectory-python
|
public |
Compute gene trajectories
|
2024-10-19 |
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mtgrasp
|
public |
reference-grade de novo animal mitochondrial genome assembly and standardization
|
2024-10-19 |
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pyteomics
|
public |
A framework for proteomics data analysis.
|
2024-10-18 |
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biocode
|
public |
Bioinformatics code libraries and scripts
|
2024-10-17 |
|
umicollapse
|
public |
Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI).
|
2024-10-17 |
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biobb_cmip
|
public |
Biobb_cmip is the Biobb module collection to compute classical molecular interaction potentials.
|
2024-10-17 |
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flexi-formatter
|
public |
Moving flexiplex barcode and UMI to bam tags
|
2024-10-16 |
|
pneumo-typer
|
public |
Pneumo-Typer: An integrated tool for simultaneous identification of serotype, sequence type, and capsule genotype in Streptococcus pneumoniae.
|
2024-10-16 |
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rseqc
|
public |
QC package for RNA-seq data.
|
2024-10-16 |
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afpdb
|
public |
A Numpy-based PDB structure manipulation package
|
2024-10-15 |
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r-chromvarmotifs
|
public |
Stores several motifs as PWMatrixList objects for use in R with packages like motifmatchr and chromVAR.
|
2024-10-15 |
|
sourcepredict
|
public |
Classification and prediction of the origin of metagenomic samples.
|
2024-10-14 |
|
meta_eukaryome_detect
|
public |
Pathogen, Parasite, Eukaryote and Virus detection in metagenomes.
|
2024-10-14 |
|
fragpipe
|
public |
Pipeline for comprehensive analysis of shotgun proteomics data
|
2024-10-12 |
|
cenote-taker3
|
public |
Cenote-Taker 3: Discover and annotate the virome
|
2024-10-12 |
|
medaka
|
public |
A tool to create consensus sequences and variant calls from nanopore sequencing data using neural networks.
|
2024-10-11 |
|
biobb_common
|
public |
Biobb_common is the base package required to use the biobb packages.
|
2024-10-11 |
|
sizemeup
|
public |
A simple tool to determine the genome size of an organism
|
2024-10-11 |
|
pyfaidx
|
public |
pyfaidx: efficient pythonic random access to fasta subsequences
|
2024-10-10 |
|
querynator
|
public |
Python package to query cancer variant databases
|
2024-10-10 |
