bioconda / packages / bioconductor-weitrix 1.0.0

Weighted matrix manipulation, finding components of variation with weighted or sparse data

Installers

conda install

  • noarch  v1.0.0
To install this package with conda run:
conda install -c bioconda bioconductor-weitrix

Description

Data type and tools for working with matrices having precision weights and missing data. This package provides a common representation and tools that can be used with many types of high-throughput data. The meaning of the weights is compatible with usage in the base R function "lm" and the package "limma". Calibrate weights by scaling weights row-wise to account for known predictors of precision. Find PCA-like components of variation even with many missing values, rotated so that individual components may be meaningfully interpreted. DelayedArray matrices and BiocParallel are supported.

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