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bioconductor-tomoda

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Tomo-seq data analysis

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-tomoda

Usage Tracking

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Description

This package provides many easy-to-use methods to analyze and visualize tomo-seq data. The tomo-seq technique is based on cryosectioning of tissue and performing RNA-seq on consecutive sections. (Reference: Kruse F, Junker JP, van Oudenaarden A, Bakkers J. Tomo-seq: A method to obtain genome-wide expression data with spatial resolution. Methods Cell Biol. 2016;135:299-307. doi:10.1016/bs.mcb.2016.01.006) The main purpose of the package is to find zones with similar transcriptional profiles and spatially expressed genes in a tomo-seq sample. Several visulization functions are available to create easy-to-modify plots.

About

Summary

Tomo-seq data analysis

Last Updated

Dec 21, 2024 at 08:15

License

MIT + file LICENSE

Total Downloads

13.4K

Supported Platforms

noarch