CMD + K

bioconductor-spotsweeper

Community

Spatially-aware quality control for spatial transcriptomics

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-spotsweeper

Usage Tracking

1.6.0
1 / 8 versions selected
Downloads (Last 6 months): 0

Description

Spatially-aware quality control (QC) software for both spot-level and artifact-level QC in spot-based spatial transcripomics, such as 10x Visium. These methods calculate local (nearest-neighbors) mean and variance of standard QC metrics (library size, unique genes, and mitochondrial percentage) to identify outliers spot and large technical artifacts.

About

Summary

Spatially-aware quality control for spatial transcriptomics

Last Updated

Mar 2, 2026 at 06:52

License

MIT + file LICENSE

Supported Platforms

noarch