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bioconductor-cpsm

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CPSM: Cancer patient survival model

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-cpsm

Usage Tracking

1.2.0
1 / 8 versions selected
Downloads (Last 6 months): 0

Description

CPSM provides a comprehensive computational pipeline for predicting survival probability and risk groups in cancer patients. The package includes steps for data preprocessing, training/test split, and normalization. It enables feature selection using univariate survival analysis and computes a LASSO-based prognostic index (PI) score. CPSM supports the development of predictive models using various feature sets and offers a suite of visualization tools, including survival curves based on predicted probabilities, barplots for predicted mean and median survival times, KM plots overlaid with individual survival predictions, and nomograms for estimating 1-, 3-, 5-, and 10-year survival probabilities. This makes CPSM a versatile tool for survival analysis in cancer research.

About

Summary

CPSM: Cancer patient survival model

Last Updated

Mar 15, 2026 at 00:02

License

GPL-3 | file LICENSE

Supported Platforms

noarch