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bioconda / packages / bioconductor-bsgenome.gaculeatus.ucsc.gasacu1.masked

Full genome sequences for Gasterosteus aculeatus (Stickleback) as provided by UCSC (gasAcu1, Feb. 2006) and stored in Biostrings objects. The sequences are the same as in BSgenome.Gaculeatus.UCSC.gasAcu1, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.

Type Size Name Uploaded Downloads Labels
conda 9.4 kB | noarch/bioconductor-bsgenome.gaculeatus.ucsc.gasacu1.masked-1.3.99-r44hdfd78af_14.tar.bz2  1 month and 17 days ago 85 main
conda 9.4 kB | noarch/bioconductor-bsgenome.gaculeatus.ucsc.gasacu1.masked-1.3.99-r43hdfd78af_13.tar.bz2  1 year and 2 months ago 786 main
conda 9.2 kB | noarch/bioconductor-bsgenome.gaculeatus.ucsc.gasacu1.masked-1.3.99-r43hdfd78af_12.tar.bz2  1 year and 7 months ago 360 main
conda 8.7 kB | noarch/bioconductor-bsgenome.gaculeatus.ucsc.gasacu1.masked-1.3.99-r42hdfd78af_11.tar.bz2  2 years and 3 months ago 638 main
conda 9.1 kB | noarch/bioconductor-bsgenome.gaculeatus.ucsc.gasacu1.masked-1.3.99-r41hdfd78af_10.tar.bz2  2 years and 5 months ago 172 main
conda 8.2 kB | noarch/bioconductor-bsgenome.gaculeatus.ucsc.gasacu1.masked-1.3.99-r41hdfd78af_9.tar.bz2  3 years and 3 months ago 836 main
conda 8.2 kB | noarch/bioconductor-bsgenome.gaculeatus.ucsc.gasacu1.masked-1.3.99-r41hdfd78af_8.tar.bz2  3 years and 8 months ago 348 main
conda 8.0 kB | noarch/bioconductor-bsgenome.gaculeatus.ucsc.gasacu1.masked-1.3.99-r40hdfd78af_7.tar.bz2  3 years and 10 months ago 224 main
conda 7.8 kB | noarch/bioconductor-bsgenome.gaculeatus.ucsc.gasacu1.masked-1.3.99-r40_6.tar.bz2  4 years and 3 months ago 239 main
conda 7.6 kB | noarch/bioconductor-bsgenome.gaculeatus.ucsc.gasacu1.masked-1.3.99-r40_5.tar.bz2  4 years and 9 months ago 246 main
conda 7.2 kB | noarch/bioconductor-bsgenome.gaculeatus.ucsc.gasacu1.masked-1.3.99-r36_4.tar.bz2  5 years and 3 months ago 272 main
conda 7.1 kB | noarch/bioconductor-bsgenome.gaculeatus.ucsc.gasacu1.masked-1.3.99-r36_3.tar.bz2  5 years and 6 months ago 270 main
conda 6.6 kB | noarch/bioconductor-bsgenome.gaculeatus.ucsc.gasacu1.masked-1.3.99-r351_0.tar.bz2  6 years and 2 months ago 324 main gcc7

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