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bioconda / packages / bioconductor-bsgenome.cfamiliaris.ucsc.canfam3.masked

Full genome sequences for Canis lupus familiaris (Dog) as provided by UCSC (canFam3, Sep. 2011) and stored in Biostrings objects. The sequences are the same as in BSgenome.Cfamiliaris.UCSC.canFam3, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.

Type Size Name Uploaded Downloads Labels
conda 9.4 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam3.masked-1.3.99-r44hdfd78af_13.tar.bz2  24 days and 9 minutes ago 61 main
conda 9.4 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam3.masked-1.3.99-r43hdfd78af_12.tar.bz2  1 year and 1 month ago 769 main
conda 9.2 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam3.masked-1.3.99-r43hdfd78af_11.tar.bz2  1 year and 6 months ago 345 main
conda 8.7 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam3.masked-1.3.99-r42hdfd78af_10.tar.bz2  2 years and 2 months ago 575 main
conda 9.1 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam3.masked-1.3.99-r41hdfd78af_9.tar.bz2  2 years and 5 months ago 462 main
conda 8.2 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam3.masked-1.3.99-r41hdfd78af_8.tar.bz2  3 years and 2 months ago 1429 main
conda 8.2 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam3.masked-1.3.99-r41hdfd78af_7.tar.bz2  3 years and 7 months ago 288 main
conda 8.0 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam3.masked-1.3.99-r40hdfd78af_6.tar.bz2  3 years and 9 months ago 159 main
conda 7.7 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam3.masked-1.3.99-r40_5.tar.bz2  4 years and 2 months ago 173 main
conda 7.6 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam3.masked-1.3.99-r40_4.tar.bz2  4 years and 8 months ago 193 main
conda 7.2 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam3.masked-1.3.99-r36_3.tar.bz2  5 years and 2 months ago 202 main
conda 7.1 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam3.masked-1.3.99-r36_2.tar.bz2  5 years and 5 months ago 219 main
conda 6.6 kB | noarch/bioconductor-bsgenome.cfamiliaris.ucsc.canfam3.masked-1.3.99-r351_0.tar.bz2  6 years and 1 month ago 262 main gcc7

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