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BEHST reads an input dataset of chromosome regions, and intersects them with the chromatin interactions available in the Hi-C dataset. Of these chromosome regions, BEHST selects those that are presentthe regulatory regions of genes of APPRIS, a dataset of principal isoform annotations. We defined these cis-regulatory regions upon the position of their nearest transcription start site of the APPRIS genes' principal transcripts (obtained through GENCODE), plus an upstream and downstream extension. Afterwards, BEHST takes the genes of the resulting partner loci found in gene regulatory regions, and performs a gene set enrichment analysis on them through g:Profiler. BEHST, finally, outputs the list of the most significant Gene Ontology terms detected by g:Profiler. Citation: Davide Chicco, Haixin Sarah Bi, Juri Reimand, and Michael M. Hoffman, 'BEHST: Genomic set enrichment analysis enhanced through integration of chromatin long-range interactions', 2018. In preparation. Website: http://behst.hoffmanlab.org/

Type Size Name Uploaded Downloads Labels
conda 23.3 kB | noarch/behst-3.8-0.tar.bz2  5 years and 3 months ago 2643 main
conda 23.0 kB | noarch/behst-3.7-1.tar.bz2  5 years and 11 months ago 2635 main
conda 22.3 kB | noarch/behst-3.7-0.tar.bz2  6 years and 6 months ago 334 main cf201901
conda 22.3 kB | noarch/behst-3.6-0.tar.bz2  6 years and 6 months ago 2650 main cf201901
conda 22.2 kB | noarch/behst-3.5-0.tar.bz2  6 years and 6 months ago 2668 main cf201901
conda 20.9 kB | noarch/behst-3.0-0.tar.bz2  6 years and 8 months ago 2674 main cf201901
conda 20.5 kB | linux-64/behst-2.9-py35r3.4.1_0.tar.bz2  7 years and 1 month ago 582 main cf201901
conda 20.3 kB | osx-64/behst-2.9-py35r3.4.1_0.tar.bz2  7 years and 1 month ago 4396 main cf201901
conda 20.5 kB | linux-64/behst-2.8-py35r3.4.1_0.tar.bz2  7 years and 1 month ago 582 main cf201901
conda 20.3 kB | osx-64/behst-2.8-py35r3.4.1_0.tar.bz2  7 years and 1 month ago 4401 main cf201901
conda 20.5 kB | linux-64/behst-2.7-py35r3.4.1_0.tar.bz2  7 years and 1 month ago 577 main cf201901
conda 20.4 kB | osx-64/behst-2.7-py35r3.4.1_0.tar.bz2  7 years and 1 month ago 4398 main cf201901
conda 20.5 kB | linux-64/behst-2.6-py27r3.4.1_0.tar.bz2  7 years and 1 month ago 594 main cf201901
conda 20.3 kB | osx-64/behst-2.6-py27r3.4.1_0.tar.bz2  7 years and 1 month ago 4408 main cf201901
conda 44.1 kB | osx-64/behst-2.5-py27r3.4.1_0.tar.bz2  7 years and 1 month ago 4401 main cf201901
conda 44.2 kB | linux-64/behst-2.5-py27r3.4.1_0.tar.bz2  7 years and 1 month ago 574 main cf201901
conda 41.8 kB | osx-64/behst-1.9-py27r3.4.1_0.tar.bz2  7 years and 4 months ago 4408 main cf201901
conda 42.2 kB | linux-64/behst-1.9-py27r3.4.1_0.tar.bz2  7 years and 4 months ago 866 main cf201901
conda 41.8 kB | linux-64/behst-1.8-py27r3.4.1_0.tar.bz2  7 years and 6 months ago 711 main cf201901
conda 41.7 kB | osx-64/behst-1.8-py27r3.4.1_0.tar.bz2  7 years and 6 months ago 4315 main cf201901
conda 41.6 kB | osx-64/behst-1.8-py27r3.3.2_0.tar.bz2  7 years and 6 months ago 200 main cf201901
conda 41.8 kB | linux-64/behst-1.8-py27r3.3.2_0.tar.bz2  7 years and 6 months ago 851 main cf201901
conda 41.9 kB | linux-64/behst-1.7-py27r3.4.1_0.tar.bz2  7 years and 6 months ago 855 main cf201901
conda 41.7 kB | osx-64/behst-1.7-py27r3.4.1_0.tar.bz2  7 years and 6 months ago 4410 main cf201901
conda 41.7 kB | osx-64/behst-1.7-py27r3.3.2_0.tar.bz2  7 years and 6 months ago 113 main cf201901
conda 41.9 kB | linux-64/behst-1.7-py27r3.3.2_0.tar.bz2  7 years and 6 months ago 696 main cf201901
conda 41.5 kB | osx-64/behst-1.6-py27r3.3.2_0.tar.bz2  7 years and 6 months ago 4413 main cf201901
conda 41.7 kB | linux-64/behst-1.6-py27r3.3.2_0.tar.bz2  7 years and 6 months ago 873 main cf201901
conda 40.9 kB | osx-64/behst-1.4-py27r3.3.2_0.tar.bz2  7 years and 7 months ago 4405 main cf201901
conda 41.0 kB | linux-64/behst-1.4-py27r3.3.2_0.tar.bz2  7 years and 7 months ago 870 main cf201901
conda 40.7 kB | osx-64/behst-0.9-py27r3.3.2_0.tar.bz2  7 years and 7 months ago 4362 main cf201901
conda 40.8 kB | linux-64/behst-0.9-py27r3.3.2_0.tar.bz2  7 years and 7 months ago 866 main cf201901
conda 40.4 kB | osx-64/behst-0.8-py27r3.3.2_0.tar.bz2  7 years and 8 months ago 4380 main cf201901
conda 40.7 kB | linux-64/behst-0.8-py27r3.3.2_0.tar.bz2  7 years and 8 months ago 879 main cf201901

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