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BEHST reads an input dataset of chromosome regions, and intersects them with the chromatin interactions available in the Hi-C dataset. Of these chromosome regions, BEHST selects those that are presentthe regulatory regions of genes of APPRIS, a dataset of principal isoform annotations. We defined these cis-regulatory regions upon the position of their nearest transcription start site of the APPRIS genes' principal transcripts (obtained through GENCODE), plus an upstream and downstream extension. Afterwards, BEHST takes the genes of the resulting partner loci found in gene regulatory regions, and performs a gene set enrichment analysis on them through g:Profiler. BEHST, finally, outputs the list of the most significant Gene Ontology terms detected by g:Profiler. Citation: Davide Chicco, Haixin Sarah Bi, Juri Reimand, and Michael M. Hoffman, 'BEHST: Genomic set enrichment analysis enhanced through integration of chromatin long-range interactions', 2018. In preparation. Website: http://behst.hoffmanlab.org/

Type Size Name Uploaded Downloads Labels
conda 23.3 kB | noarch/behst-3.8-0.tar.bz2  5 years and 3 months ago 2630 main
conda 23.0 kB | noarch/behst-3.7-1.tar.bz2  5 years and 11 months ago 2623 main
conda 22.3 kB | noarch/behst-3.7-0.tar.bz2  6 years and 5 months ago 332 main cf201901
conda 22.3 kB | noarch/behst-3.6-0.tar.bz2  6 years and 5 months ago 2637 main cf201901
conda 22.2 kB | noarch/behst-3.5-0.tar.bz2  6 years and 5 months ago 2654 main cf201901
conda 20.9 kB | noarch/behst-3.0-0.tar.bz2  6 years and 8 months ago 2660 main cf201901
conda 20.5 kB | linux-64/behst-2.9-py35r3.4.1_0.tar.bz2  7 years and 27 days ago 580 main cf201901
conda 20.3 kB | osx-64/behst-2.9-py35r3.4.1_0.tar.bz2  7 years and 27 days ago 4384 main cf201901
conda 20.5 kB | linux-64/behst-2.8-py35r3.4.1_0.tar.bz2  7 years and 1 month ago 580 main cf201901
conda 20.3 kB | osx-64/behst-2.8-py35r3.4.1_0.tar.bz2  7 years and 1 month ago 4389 main cf201901
conda 20.5 kB | linux-64/behst-2.7-py35r3.4.1_0.tar.bz2  7 years and 1 month ago 574 main cf201901
conda 20.4 kB | osx-64/behst-2.7-py35r3.4.1_0.tar.bz2  7 years and 1 month ago 4386 main cf201901
conda 20.5 kB | linux-64/behst-2.6-py27r3.4.1_0.tar.bz2  7 years and 1 month ago 592 main cf201901
conda 20.3 kB | osx-64/behst-2.6-py27r3.4.1_0.tar.bz2  7 years and 1 month ago 4396 main cf201901
conda 44.1 kB | osx-64/behst-2.5-py27r3.4.1_0.tar.bz2  7 years and 1 month ago 4388 main cf201901
conda 44.2 kB | linux-64/behst-2.5-py27r3.4.1_0.tar.bz2  7 years and 1 month ago 572 main cf201901
conda 41.8 kB | osx-64/behst-1.9-py27r3.4.1_0.tar.bz2  7 years and 4 months ago 4396 main cf201901
conda 42.2 kB | linux-64/behst-1.9-py27r3.4.1_0.tar.bz2  7 years and 4 months ago 864 main cf201901
conda 41.8 kB | linux-64/behst-1.8-py27r3.4.1_0.tar.bz2  7 years and 5 months ago 708 main cf201901
conda 41.7 kB | osx-64/behst-1.8-py27r3.4.1_0.tar.bz2  7 years and 5 months ago 4303 main cf201901
conda 41.6 kB | osx-64/behst-1.8-py27r3.3.2_0.tar.bz2  7 years and 6 months ago 200 main cf201901
conda 41.8 kB | linux-64/behst-1.8-py27r3.3.2_0.tar.bz2  7 years and 6 months ago 848 main cf201901
conda 41.9 kB | linux-64/behst-1.7-py27r3.4.1_0.tar.bz2  7 years and 6 months ago 853 main cf201901
conda 41.7 kB | osx-64/behst-1.7-py27r3.4.1_0.tar.bz2  7 years and 6 months ago 4398 main cf201901
conda 41.7 kB | osx-64/behst-1.7-py27r3.3.2_0.tar.bz2  7 years and 6 months ago 113 main cf201901
conda 41.9 kB | linux-64/behst-1.7-py27r3.3.2_0.tar.bz2  7 years and 6 months ago 694 main cf201901
conda 41.5 kB | osx-64/behst-1.6-py27r3.3.2_0.tar.bz2  7 years and 6 months ago 4401 main cf201901
conda 41.7 kB | linux-64/behst-1.6-py27r3.3.2_0.tar.bz2  7 years and 6 months ago 871 main cf201901
conda 40.9 kB | osx-64/behst-1.4-py27r3.3.2_0.tar.bz2  7 years and 7 months ago 4393 main cf201901
conda 41.0 kB | linux-64/behst-1.4-py27r3.3.2_0.tar.bz2  7 years and 7 months ago 868 main cf201901
conda 40.7 kB | osx-64/behst-0.9-py27r3.3.2_0.tar.bz2  7 years and 7 months ago 4349 main cf201901
conda 40.8 kB | linux-64/behst-0.9-py27r3.3.2_0.tar.bz2  7 years and 7 months ago 864 main cf201901
conda 40.4 kB | osx-64/behst-0.8-py27r3.3.2_0.tar.bz2  7 years and 7 months ago 4368 main cf201901
conda 40.7 kB | linux-64/behst-0.8-py27r3.3.2_0.tar.bz2  7 years and 7 months ago 877 main cf201901

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