bamslice
Extract byte ranges from BAM files and convert to interleaved FASTQ format for parallel processing
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Description
bamslice extracts specific byte ranges from BAM files and converts them to interleaved FASTQ format. Designed for parallel processing across compute nodes without requiring pre-indexing. It auto-aligns to BGZF block boundaries and guarantees no duplicate reads when using contiguous byte ranges.
About
Summary
Extract byte ranges from BAM files and convert to interleaved FASTQ format for parallel processing
Last Updated
Jan 15, 2026 at 05:25
License
AGPL-3.0-only
Total Downloads
3.4K
Supported Platforms
linux-aarch64
linux-64
macOS-arm64
macOS-64
GitHub Repository
https://github.com/nebiolabs/bamsliceDocumentation
https://docs.rs/bamslice