| Package Name | Access | Summary | Updated |
|---|---|---|---|
| fastqc | public | Java quality control application for high throughput sequence data | 2025-03-25 |
| picard | public | No Summary | 2025-03-25 |
| fasta | public | Biological sequence alignment tool | 2025-03-25 |
| bamtools | public | No Summary | 2025-03-25 |
| tophat | public | Fast splice junction mapper for RNA-Seq reads | 2025-03-25 |
| cufflinks | public | Transcriptome assembly and differential expression analysis for RNA-Seq | 2025-03-25 |
| boost | public | Boost C++ Libraries - headers and static libraries | 2025-03-25 |
| icu | public | Libraries for Unicode support and internationalization | 2025-03-25 |
| htslib | public | No Summary | 2025-03-25 |
| tabix | public | No Summary | 2025-03-25 |
| soapdenovo2 | public | Short read assembler specially designed for Illumina GA short reads | 2025-03-25 |
| blast | public | No Summary | 2025-03-25 |
| oases | public | De novo transcriptome assembler for very short reads | 2025-03-25 |
| velvet | public | Sequence assembler for very short reads | 2025-03-25 |
| shrimp | public | Package for mapping (short) reads to a reference genome | 2025-03-25 |
| hmmer | public | Biosequence analysis using profile HMMs | 2025-03-25 |
| clustalw | public | Multiple alignment of nucleic acid and protein sequences | 2025-03-25 |
| graphviz | public | Graph Visualization Software | 2025-03-25 |
| libgd | public | Library for the dynamic creation of images | 2025-03-25 |
| bfast | public | Fast and accurate mapping of short reads to reference sequences | 2025-03-25 |
| bwa | public | No Summary | 2025-03-25 |
| samtools | public | No Summary | 2025-03-25 |
| plink | public | Open-source whole genome association analysis toolset | 2025-03-25 |
| bowtie2 | public | No Summary | 2025-03-25 |
| bowtie | public | Ultrafast, memory-efficient short read aligner | 2025-03-25 |
