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bcbio / packages

Package Name Access Summary Updated
pythonpy public the swiss army knife of the command line 2025-03-25
seqcluster public Small RNA-seq pipeline 2025-03-25
prettytable public No Summary 2025-03-25
azure-sdk-for-python public This project provides a set of Python packages that make it easy to access the Microsoft Azure components such as ServiceManagement, Storage, and ServiceBus. 2025-03-25
hmmlearn public Hidden Markov Models in Python, with scikit-learn like API 2025-03-25
seqcluster_lite None small RNA-seq pipeline for bcbio 2025-03-25
svtyper None Bayesian genotyper for structural variants 2025-03-25
metasv None An accurate and integrative structural-variant caller for next generation sequencing 2025-03-25
pytabix None fast random access to sorted files compressed with bgzip and indexed by tabix 2025-03-25
crossmap None Convenient conversion of genome coordinates between different assemblies 2025-03-25
htseq None A framework to process and analyze data from high-throughput sequencing (HTS) assays 2025-03-25
arvados-python-client None Python API for Arvados, an open source platform for managing and analyzing biomedical big data 2025-03-25
ciso8601 None Fast ISO8601 date time parser for Python written in C 2025-03-25
hap.py None No Summary 2025-03-25
vgraph None No Summary 2025-03-25
phylowgs None Application for inferring subclonal composition and evolution from whole-genome sequencing data 2025-03-25
pyloh None Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity 2025-03-25
ete2 None Phylogenetic tree analyses and exploration 2025-03-25
pybedtools None No Summary 2025-03-25
pyfaidx None efficient pythonic random access to fasta subsequences 2025-03-25
jmespath None No Summary 2025-03-25
botocore None No Summary 2025-03-25
bcdoc None No Summary 2025-03-25
awscli None No Summary 2025-03-25
python-graph-dot None No Summary 2025-03-25

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