Comprehensive E. coli Typing Pipeline: MLST, Serotyping, CH Typing, Phylogrouping, AMR, and Virulence Analysis
EcoliTyper is a comprehensive bioinformatics pipeline for complete Escherichia coli genomic characterization. It integrates multiple typing schemes including MLST, serotyping (O and H antigens), CH typing (FumC and FimH), ezClermont phylogrouping, antibiotic resistance gene detection (AMRfinderPlus), and virulence/plasmid screening (ABRicate).
