Library for analyzing MEA files.
This is the repository of the CureQ consortium.
This repository contains a library with functions for analyzing MEA files.
This repository is maintained by the Amsterdam University of Applied Sciences (AUMC).
More information: https://cureq.nl/
Open a terminal and navigate to your home folder.
Install the MEA analyzer with the following command when you are using Pip:
pip install CureQ
Install the MEA analyzer with the following command when you are using Conda:
conda install CureQ::CureQ
Now you can try the CureQ library functions in your Python environment.
Import the function you need, call this function and watch how the pipeline analyzes your MEA file!
from CureQ.mea import analyse_electrode # Library function for analyzing electrodes
file_path = 'path/to/your/mea_file.h5' # Path to your MEA file
hertz = 20000 # Sampling frequency of MEA system
electrodes = [109, 110] # Electrodes to be analyzed
analyse_electrode(file_path, electrodes, hertz) # Analyzes specified electrodes in the MEA file
from CureQ.mea import analyse_well # Library function for analyzing wells
file_path = 'path/to/your/mea_file.h5' # Path to your MEA file
hertz = 20000 # Sampling frequency of MEA system
wells = [10] # Wells to be analyzed
analyse_well(filename, wells, hertz) # Analyzes specified wells in the MEA file