RNA-seq is a method that uses next-generation sequencing to quantify and analyze RNA. It can be used for finding significantly differentially expressed genes (DEGs) in well sequenced organisms. This package is a complete function library for analyzing read files, trimming of raw reads, mapping on reference genomes, counting reads per gene and finding significant DEGs.
To install this package, run one of the following:
Due to many conda channels being removed, the entire project has now been integrated into
DOCKER
https://hub.docker.com/repository/docker/xentrics/geo2rnaseq
and SINGULARITY
https://singularity-hub.org/collections/4387
Summary
RNA-seq is a method that uses next-generation sequencing to quantify and analyze RNA. It can be used for finding significantly differentially expressed genes (DEGs) in well sequenced organisms. This package is a complete function library for analyzing read files, trimming of raw reads, mapping on reference genomes, counting reads per gene and finding significant DEGs.
Information Last Updated
Mar 25, 2025 at 16:27
License
GPL (>= 3)
Total Downloads
436
Platforms