| Package Name | Access | Summary | Updated |
|---|---|---|---|
| napari-spatialdata | public | Interactive visualization of spatial omics data with napari | 2025-09-18 |
| regvelo | public | Estimation of RNA velocity with variational inference. | 2025-08-21 |
| torchtyping | public | Runtime type annotations for the shape, dtype etc. of PyTorch Tensors. | 2025-08-21 |
| torchode | public | A parallel ODE solver for PyTorch | 2025-08-21 |
| r-unigd | public | Universal Graphics Device | 2025-08-18 |
| perl-switch-plain | public | A simple switch statement for Perl | 2025-05-09 |
| perl-interpolation | public | Arbitrary string interpolation semantics (using tie()) | 2025-05-09 |
| r-caspercnv | public | CaSpER is published in Nature Communications: https://www.nature.com/articles/s41467-019-13779-x | 2025-03-25 |
| scvelo | public | RNA velocity generalized through dynamical modeling | 2025-03-25 |
| ktplotspy | public | Python library for plotting Cellphonedb results. Ported from ktplots R package. | 2025-03-25 |
| python-circos | public | Python library for drawing Circos plots using Matplotlib | 2025-03-25 |
| cellphonedb | public | Inferring cell-cell communication. | 2025-03-25 |
| squidpy | public | Spatial Single Cell Analysis in Python | 2025-03-25 |
| r-archr | public | ArchR is a full-featured R package for processing and analyzing single-cell ATAC-seq data. ArchR provides the most extensive suite of scATAC-seq analysis tools of any software available. Additionally, ArchR excels in both speed and resource usage, making it possible to analyze 1 million cells in 8 hours on a MacBook Pro laptop. | 2025-03-25 |
| r-upsetr | public | A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets | 2025-03-25 |
| r-vscdebugger | public | This package provides support for the VS Code extension R Debugger. | 2025-03-25 |
| r-misha | public | Toolkit for analysis of genomic data | 2025-03-25 |
| scgpt | public | Large-scale generative pretrain of single cell using transformer. | 2025-03-25 |
| scib | public | Evaluating single-cell data integration methods | 2025-03-25 |
| plinkio | public | A library for parsing plink genotype files | 2025-03-25 |
