| Package Name | Access | Summary | Updated |
|---|---|---|---|
| busco | public | BUSCO provides measures for quantitative assessment of genome assembly, gene set, and transcriptome completeness based on evolutionarily informed expectations of gene content from near-universal single-copy orthologs selected from OrthoDB. | 2025-03-25 |
| bioconductor-polyester | public | This package can be used to simulate RNA-seq reads from differential expression experiments with replicates. The reads can then be aligned and used to perform comparisons of methods for differential expression. | 2025-03-25 |
| braker1 | public | BRAKER1: Unsupervised RNA-Seq-based genome annotation with GeneMark-ET and AUGUSTUS | 2025-03-25 |
| perl-logger-simple | public | Implementation of the Simran-Log-Log and Simran-Error-Error modules | 2025-03-25 |
| perl-object-insideout | public | Object::InsideOut - Comprehensive inside-out object support module | 2025-03-25 |
| perl-exception-class | public | A module that allows you to declare real exception classes in Perl | 2025-03-25 |
| genemark_es | public | Gene Prediction in Eukaryotes | 2025-03-25 |
| pyadhore | public | Python code for handling i-ADHoRe output. | 2025-03-25 |
| orthofinder-dl | public | Accurate inference of orthogroups, orthologues, gene trees and rooted species tree made easy! With Diamond instead of Blast, and Louvain instead of MCL | 2025-03-25 |
| louvain_generic | public | Community detection tool | 2025-03-25 |
| iadhore | public | i-ADHoRe is a highly sensitive software tool to detect degenerated homology relations within and between different genomes. | 2025-03-25 |
| aspera-connect | public | Data transfer program | 2025-03-25 |
