The Bayesian Gene Heritability Analysis software (BAGHERA) estimates the contribution to the heritability of a trait/disease of all the SNPs in the genome (genome-wide heritability) and those nearby protein-coding genes (gene-level heritability). BAGHERA requires only summary statistics from a Genome-wide Association Study (GWAS), LD scores calculated from a population matching the ethnicity of the GWAS study and a gene annotation file in GTF format.